Factsheet for Zm00001d020669_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89595	Sorghum	cytosol	84.58	97.64
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	71.62	88.53
Os09t0446800-01	Rice	plastid	84.86	87.98
TraesCS5A01G232800.1	Wheat	nucleus	84.45	87.18
VIT_06s0004g01160.t01	Wine grape	cytosol	75.17	86.5
HORVU5Hr1G066960.2	Barley	plastid	84.99	86.41
KRG93013	Soybean	nucleus	74.76	86.16
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	74.62	86.01
TraesCS5B01G231100.1	Wheat	plastid	83.9	85.89
CDY37133	Canola	cytosol	73.94	85.62
Bra018851.1-P	Field mustard	cytosol	73.94	85.62
TraesCS5D01G235400.2	Wheat	plastid	83.49	85.59
CDY22798	Canola	cytosol	73.67	85.31
CDY62106	Canola	cytosol	46.66	85.07
AT1G50480.1	Thale cress	cytosol	73.4	84.86
Solyc01g006280.2.1	Tomato	extracellular, nucleus	72.85	84.23
Bra030488.1-P	Field mustard	cytosol	72.44	84.02
CDY29587	Canola	cytosol	72.44	84.02
PGSC0003DMT400081881	Potato	cytosol	72.44	83.75
AT2G12280.1	Thale cress	plastid	8.73	71.11
AT2G12200.1	Thale cress	mitochondrion, plastid	6.0	69.84
KRH33286	Soybean	nucleus	36.56	69.43
CDY62107	Canola	plastid	22.78	68.72

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.10.410.10	EntrezGene:541944	MapMan:7.5.7.1
UniProt:A0A1D6I5L0	InterPro:Formate_THF_ligase	InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004329	GO:GO:0005488	GO:GO:0005524	GO:GO:0016874	HAMAP:MF_01543	ProteinID:ONM55379.1
InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722	PANTHER:PTHR43274	SUPFAM:SSF52540
UniParc:UPI0004DEC0EE	EnsemblPlantsGene:Zm00001d020669	EnsemblPlants:Zm00001d020669_P001	EnsemblPlants:Zm00001d020669_T001	SEG:seg	:

Description

Formate tetrahyrofolate ligase

Coordinates

chr7:+:127426894..127431481

Molecular Weight (calculated)

78489.0 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.066

Length

733 amino acids

Sequence
(BLAST)

001: MDLRAPPTYH KTSSSIILWR RRPDAGAARR PEAINNRASK GLSRPIASPA RALSVHDHHH HHSLQRPALG RDCERAVAAR SSAVVAPPPL PPPPPLPKMP
101: SPTIRRLDVA SPVPADIDIA NSVEPLPIAD IAAELGLRPE HYDLYGKYKA KVLLSVLDEL KAQQDGYYVV VGGITPTPLG EGKSTTTVGL CQALGAFLDK
201: KVVTCLRQPS QGPTFGIKGG AAGGGYSQVI PMDEFNLHLT GDIHAITAAN NLLAAAIDTR IFHENSQSDK ALFNRLCPAN KEGKRHFADI MFRRLTKLGV
301: SKTDPNELTP DEIRRFARLD IDPESITWRR VMDVNDRFLR KITVGQGPEE KGMVRETGFD ISVASEIMAV LALTTSLADM RERLGRMVIG NSKSGEPITA
401: DDLGVGGALT VLMKDAIHPT LMQTLEGTPV LVHAGPFANI AHGNSSIVAD KIALKLVGKG GFVVTEAGFG ADIGTEKFMD IKCRYSGLVP QCAIIVATIR
501: ALKMHGGGPE VVAGKPLDHA YVSENVALVE AGCINLAKHI SNTRSYGVNV VVAINKFASD TEAEMKAVHS AAMAAGAFDA VVCTHHAHGG KGAVELGLAV
601: QRACESQAEP LKFLYPLESS IKEKIESIAK FYGASGVEYS EQAEKQIEMY TKQGFSSLPI CMAKTQYSFS HVPSMKGAPT GFVLPIRDVR ASIGAGFIYP
701: LVGTMSTMPG LPTRPCFYQI DVDTATGKVM GLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.