Factsheet for TraesCS5A01G232800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

nucleus: 28628250

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G231100.1	Wheat	plastid	96.2	95.39
TraesCS5D01G235400.2	Wheat	plastid	96.06	95.38
HORVU5Hr1G066960.2	Barley	plastid	96.2	94.73
OQU89595	Sorghum	cytosol	83.66	93.54
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	73.94	88.53
Os09t0446800-01	Rice	plastid	88.03	88.4
CDY62106	Canola	cytosol	49.3	87.06
VIT_06s0004g01160.t01	Wine grape	cytosol	77.75	86.66
KRG93013	Soybean	nucleus	77.32	86.32
AT1G50480.1	Thale cress	cytosol	76.76	85.96
CDY37133	Canola	cytosol	76.62	85.94
Bra018851.1-P	Field mustard	cytosol	76.62	85.94
CDY22798	Canola	cytosol	76.48	85.78
KRH36263	Soybean	cytosol, endoplasmic reticulum, nucleus	76.76	85.69
CDY29587	Canola	cytosol	76.2	85.6
Solyc01g006280.2.1	Tomato	extracellular, nucleus	76.34	85.49
Bra030488.1-P	Field mustard	cytosol	76.06	85.44
PGSC0003DMT400081881	Potato	cytosol	75.92	85.02
Zm00001d020669_P001	Maize	extracellular	87.18	84.45
AT2G12280.1	Thale cress	plastid	9.58	75.56
AT2G12200.1	Thale cress	mitochondrion, plastid	6.48	73.02
KRH33286	Soybean	nucleus	38.03	69.95
CDY62107	Canola	plastid	23.52	68.72

Protein Annotations

KEGG:00670+6.3.4.3	KEGG:00720+6.3.4.3	Gene3D:1.10.8.770	Gene3D:3.10.410.10	MapMan:7.5.7.1	InterPro:Formate_THF_ligase
InterPro:Formate_THF_ligase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004329	GO:GO:0005488
GO:GO:0005524	HAMAP:MF_01543	InterPro:P-loop_NTPase	PFAM:PF01268	ScanProsite:PS00721	ScanProsite:PS00722
PANTHER:PTHR43274	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5A01G232800	EnsemblPlants:TraesCS5A01G232800.1	TIGR:cd00477	SEG:seg

Description

No Description!

Coordinates

chr5A:-:448109372..448112984

Molecular Weight (calculated)

75601.8 Da

IEP (calculated)

8.390

GRAVY (calculated)

0.003

Length

710 amino acids

Sequence
(BLAST)

001: MDLPAPPTSQ PRTLSSIILS RRRADAGARI NKTASQRLLS PPPLPRHHSL LRLRPAVARS SAVSAPPLVP PMTTPAPNPT IRRLDVASPV PADIDIANAV
101: EPLHIADIAA ELGVPPEHYD LYGKYKAKVL LSVLDKLQGQ QDGYYVVVGG ITPTPLGEGK STTTVGLCQA LGAFLDKKVV TCVRQPSQGP TFGIKGGAAG
201: GGYSQVIPMD EFNLHMTGDI HAITAANNLL AAAIDTRIFH EASQSDKALF NRLCPANKEG KRRFADVMLR RLIKLGISKT DPDELTPEEV RRFARLDIDP
301: ASITWRRVMD VNDRFLRKIT VGQGPEEKGM VRETGFDISV ASEIMAVLAL TTSLADMRER LGRMVIGNSK AGEPVTADDL GLGGALTVLM KDAIHPTLMQ
401: TLEGTPVLVH AGPFANIAHG NSSIVADKIA LKLVGKGGFV VTEAGFGADI GTEKFMDIKC RYSGLTPQCA IIVATIRALK MHGGGPDVVA GKPLDHAYVS
501: ENVALVEAGC VNLAKHISNT KGYGVNVVVA INKFATDTDA EMEVVKKAAM AAGAFDAVVC SHHAHGGKGA VDLGVAVQRA CESQAEPLKF LYPLDSSIKE
601: KIESIAKFYG ASGVEYSEQA EKQIEMYTKQ GFSNLPICMA KTQYSFSHVP SMKGAPSGFV LPIRDVRASI GAGFIYPLVG TMSTMPGLPT RPCFYEIDID
701: TATGKVMGLS

Best Arabidopsis Sequence Match ( AT1G50480.1 )
(BLAST)

001: MSSSTRKLEV VSPVPADIDI ANSVEPLHIS EIAKDLNINP LHYDLYGKYK AKVLLSAFDE LQGQEDGYYV VVGGITPTPL GEGKSTTTVG LCQALGAYLD
101: KKVVTCLRQP SQGPTFGIKG GAAGGGYSQV IPMDEFNLHL TGDIHAITAS NNLLAAAIDT RIFHETSQSD KALFNRLCPP NKEGKRSFSD IMFRRLTKLG
201: ISKTSPEELT PEEIKKFARL DIDPASITWR RVMDVNDRFL RKITIGQGPE EKGMTRETGF DISVASEIMA VLALTTSLGD MRERLGKMVI GNSKAGDPIT
301: ADDLGVGGAL TVLMKDAINP TLMQTLEGTP VLVHAGPFAN IAHGNSSIVA DKIALKLVGP GGFVVTEAGF GSDIGTEKFM NIKCRYSGLT PQCAIVVATV
401: RALKMHGGGP DVVAGRPLDR AYVSENVSLV EAGCVNLAKH ISNTKAYGVN VIVAVNMFAT DTEAELNAVR KFSMDAGAFD AVVCSHHAHS GKGAVDLGIA
501: VEKACQNITQ PLRFLYPLDI GIKDKIEAIA KSYGASGVEY SDQAEKQIEM YTQQGFSNLP ICMSKTQYSF SHDASKKGAP SGFVLPIRDV RGSIGAGFIY
601: PLVGTMSTMP GLPTRPCFYE IDIDTETGKV RGLS

Arabidopsis Description

THFSFormate--tetrahydrofolate ligase [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.