Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G324500.1 | Wheat | cytosol | 97.61 | 98.7 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 97.06 | 97.51 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 94.77 | 91.25 |
| EER92924 | Sorghum | cytosol | 77.78 | 81.05 |
| Os03t0130500-01 | Rice | plasma membrane | 79.16 | 80.71 |
| Zm00001d027503_P036 | Maize | cytosol | 67.49 | 69.27 |
| Zm00001d048338_P035 | Maize | cytosol | 68.87 | 69.12 |
| KRH74100 | Soybean | cytosol | 6.7 | 54.89 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 41.41 | 47.62 |
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 39.58 | 47.36 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 40.95 | 46.85 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 42.33 | 45.83 |
| KRH60909 | Soybean | endoplasmic reticulum | 42.52 | 43.6 |
| CDY31869 | Canola | cytosol | 39.3 | 43.19 |
| CDX96625 | Canola | cytosol | 38.75 | 43.06 |
| Bra012247.1-P | Field mustard | cytosol | 39.49 | 43.0 |
| Bra025842.1-P | Field mustard | cytosol | 39.58 | 42.97 |
| CDY01356 | Canola | cytosol | 38.66 | 42.96 |
| KRH51589 | Soybean | endoplasmic reticulum | 42.15 | 42.66 |
| CDY66337 | Canola | cytosol | 38.75 | 42.63 |
| CDY29508 | Canola | cytosol | 38.84 | 42.6 |
| CDY33644 | Canola | cytosol | 38.84 | 42.56 |
| AT1G20760.1 | Thale cress | cytosol | 39.67 | 42.39 |
| KRH14013 | Soybean | endoplasmic reticulum | 39.58 | 41.56 |
| KRH74101 | Soybean | endoplasmic reticulum | 31.22 | 39.63 |
| PGSC0003DMT400025666 | Potato | cytosol | 5.6 | 37.65 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 38.48 | 36.92 |
| Solyc02g082540.2.1 | Tomato | nucleus | 34.34 | 35.96 |
| Solyc04g082560.2.1 | Tomato | cytosol | 39.39 | 34.93 |
| CDY00394 | Canola | cytosol | 36.18 | 34.44 |
| CDY08192 | Canola | cytosol | 36.64 | 34.31 |
| Bra012288.1-P | Field mustard | cytosol | 35.54 | 34.16 |
| CDY38814 | Canola | cytosol | 35.63 | 33.92 |
| CDY04654 | Canola | cytosol | 36.55 | 33.81 |
| CDY01320 | Canola | cytosol | 36.27 | 33.45 |
| CDX96582 | Canola | cytosol | 34.89 | 33.25 |
| Bra016413.1-P | Field mustard | cytosol | 34.8 | 33.25 |
| AT1G21630.2 | Thale cress | cytosol | 37.37 | 32.64 |
| TraesCS7D01G539600.2 | Wheat | cytosol | 38.11 | 32.12 |
| Bra017933.1-P | Field mustard | cytosol | 35.63 | 31.47 |
| Solyc02g082530.1.1 | Tomato | nucleus | 2.2 | 24.74 |
| TraesCS7D01G430800.1 | Wheat | cytosol | 10.28 | 20.55 |
| TraesCS6D01G121200.1 | Wheat | cytosol | 10.1 | 20.11 |
| TraesCS2D01G544000.1 | Wheat | cytosol | 9.0 | 17.95 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | InterPro:IPR000261 |
| InterPro:IPR002048 | PFAM:PF12763 | PFAM:PF13202 | ScanProsite:PS00018 | PFscan:PS50031 | PFscan:PS50222 |
| PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SMART:SM00054 | SUPFAM:SSF47473 | EnsemblPlantsGene:TraesCS4D01G321600 |
| EnsemblPlants:TraesCS4D01G321600.1 | TIGR:cd00052 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4D:-:484149604..484156045
Molecular Weight (calculated)
115038.0 Da
IEP (calculated)
5.509
GRAVY (calculated)
-0.617
Length
1089 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGMEAFEAY FRRADLNQDG RISGQEAVAF FQGASLPQQV LAQVWMHADQ SKTGFLGRPE FFNALRLVTV AQSGRQLTPD IVQSALYGPA AARIPPPKIA
0101: GGPAPPQAGA GAPRPQGNAA APAPASGQAG APQMNPAAAA PRPQGSGMMP TSAAAPRPQG SGMMLTSAAA PRPQGSGMMP TSTQFAGAPQ ANAGAVPRPQ
0201: GVNSMMPAAS QGGAMPPNQF TGPRGTQSQS PNMGYAQQLL TSSTGFMRPP PQVGAPATSL QATGMNQSPL GGGSMGGSVG WQGGNVGSFG GISQPSPGAA
0301: VPSQTTSGGF GLGMSSSMSM VPGQQTHAMS SSSLPPQSNS AVLPSDSRAL VLSGNGPASG SGASTDIFSA LTQPKPSTST PALPTSTMPN SSSFMSKPTG
0401: SQNLANLTQP GSLQGTPTVS YGTSQPQQTQ PITKPSVPSP GVSASVSNST SQWPKVTQSD IQKYTKVFGD VDRDRDGKIT GAEARTLFLS WRLPRDVLKQ
0501: VWDLSDQDND GMLSLREFCI ALYLMERNRA GTPLPPSLPD SLKFDETLLR ATGLPSTAYN APSWQPNQGL PHRGPGAPGL PTGGVRPPLP QMHSQTDGAT
0601: RPGQPRPHMP GMDNHAAAQG IKDDRSGVNS AAQEAPKKVE VEKQVLDSRE KLEYYRTKMQ DLVLYKSRCD NRLNEITERA SSDKREVELL SKKYEEKYKQ
0701: VAELASKLAV EEAAFRDVQE RKVELNDALI KMVQGGSVDG LLQVRADRIQ HQLEEMEKAF NERCKHFGLQ FKPSATVELP FGWEPGQQEG AVEWDEDWDK
0801: FEDEGFGLVK DNGTIVENPA SADIANASSL WDDGVSTDGM SPVASSNGHI KDVRHYRAGD QAPESELAYD FGDESVRSPG SAGRSASGSP FKSSRFGVHD
0901: SSPTKKGTYS DHGGSESVFG DNYGDETTWN FDDQDTDSVW GSNAMNEPGH HGSNSFFGSD DFNVDPVRVG SPTGASAYGK KSTFFDDSVP SSPAYTSGFS
1001: PKFGESRDDS SSYNFGRFDS FRSQDSAVPQ ESRFSRFDSV TSSKGESAAG FDSSNSSRNF GRFDSFDEAD PFGSTGPFKA SGARSPPKF
0101: GGPAPPQAGA GAPRPQGNAA APAPASGQAG APQMNPAAAA PRPQGSGMMP TSAAAPRPQG SGMMLTSAAA PRPQGSGMMP TSTQFAGAPQ ANAGAVPRPQ
0201: GVNSMMPAAS QGGAMPPNQF TGPRGTQSQS PNMGYAQQLL TSSTGFMRPP PQVGAPATSL QATGMNQSPL GGGSMGGSVG WQGGNVGSFG GISQPSPGAA
0301: VPSQTTSGGF GLGMSSSMSM VPGQQTHAMS SSSLPPQSNS AVLPSDSRAL VLSGNGPASG SGASTDIFSA LTQPKPSTST PALPTSTMPN SSSFMSKPTG
0401: SQNLANLTQP GSLQGTPTVS YGTSQPQQTQ PITKPSVPSP GVSASVSNST SQWPKVTQSD IQKYTKVFGD VDRDRDGKIT GAEARTLFLS WRLPRDVLKQ
0501: VWDLSDQDND GMLSLREFCI ALYLMERNRA GTPLPPSLPD SLKFDETLLR ATGLPSTAYN APSWQPNQGL PHRGPGAPGL PTGGVRPPLP QMHSQTDGAT
0601: RPGQPRPHMP GMDNHAAAQG IKDDRSGVNS AAQEAPKKVE VEKQVLDSRE KLEYYRTKMQ DLVLYKSRCD NRLNEITERA SSDKREVELL SKKYEEKYKQ
0701: VAELASKLAV EEAAFRDVQE RKVELNDALI KMVQGGSVDG LLQVRADRIQ HQLEEMEKAF NERCKHFGLQ FKPSATVELP FGWEPGQQEG AVEWDEDWDK
0801: FEDEGFGLVK DNGTIVENPA SADIANASSL WDDGVSTDGM SPVASSNGHI KDVRHYRAGD QAPESELAYD FGDESVRSPG SAGRSASGSP FKSSRFGVHD
0901: SSPTKKGTYS DHGGSESVFG DNYGDETTWN FDDQDTDSVW GSNAMNEPGH HGSNSFFGSD DFNVDPVRVG SPTGASAYGK KSTFFDDSVP SSPAYTSGFS
1001: PKFGESRDDS SSYNFGRFDS FRSQDSAVPQ ESRFSRFDSV TSSKGESAAG FDSSNSSRNF GRFDSFDEAD PFGSTGPFKA SGARSPPKF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.