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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00394 Canola cytosol 78.59 85.66
Bra012288.1-P Field mustard cytosol 77.39 85.17
CDY04654 Canola cytosol 80.03 84.79
CDY08192 Canola cytosol 79.07 84.78
CDY38814 Canola cytosol 77.31 84.27
CDY01320 Canola cytosol 79.79 84.25
Bra016413.1-P Field mustard cytosol 76.98 84.21
CDX96582 Canola cytosol 76.9 83.9
Bra017933.1-P Field mustard cytosol 75.38 76.24
KRH74100 Soybean cytosol 6.82 63.91
VIT_03s0038g03870.t01 Wine grape cytosol 38.65 52.97
Solyc02g082540.2.1 Tomato nucleus 39.78 47.69
AT1G20760.1 Thale cress cytosol 35.61 43.57
GSMUA_Achr8P13420_001 Banana cytosol 32.8 42.96
GSMUA_Achr4P11750_001 Banana cytosol 36.33 42.22
GSMUA_Achr5P19150_001 Banana endoplasmic reticulum 31.11 40.97
Os06t0728600-00 Rice plasma membrane 28.31 39.49
Os03t0130500-01 Rice plasma membrane 33.28 38.86
Zm00001d014862_P002 Maize cytosol 37.61 38.73
EER92924 Sorghum cytosol 32.24 38.47
EER89004 Sorghum cytosol 37.77 38.42
Zm00001d037125_P009 Maize cytosol 37.21 38.41
TraesCS4B01G324500.1 Wheat cytosol 32.4 37.51
TraesCS4D01G321600.1 Wheat cytosol 32.64 37.37
TraesCS5A01G497000.1 Wheat cytosol 32.48 37.36
TraesCS7D01G539600.2 Wheat cytosol 37.69 36.38
TraesCS7A01G553100.1 Wheat cytosol 37.53 36.17
HORVU4Hr1G082280.2 Barley cytosol 32.48 35.81
TraesCS7B01G476800.3 Wheat cytosol 37.21 35.72
HORVU7Hr1G121230.4 Barley cytosol 36.33 34.95
Zm00001d027503_P036 Maize cytosol 28.79 33.84
Zm00001d048338_P035 Maize cytosol 28.95 33.27
AT3G20290.1 Thale cress cytosol 8.66 19.82
AT4G05520.1 Thale cress cytosol 8.5 19.41
Protein Annotations
Gene3D:1.10.238.10MapMan:22.1.4.7EntrezGene:838765ProteinID:AEE30129.1ArrayExpress:AT1G21630EnsemblPlantsGene:AT1G21630
RefSeq:AT1G21630TAIR:AT1G21630RefSeq:AT1G21630-TAIR-GEnsemblPlants:AT1G21630.2TAIR:AT1G21630.2Unigene:At.23288
ncoils:CoilInterPro:EF-hand-dom_pairInterPro:EF_hand_domInterPro:EH_domUniProt:F4HY32GO:GO:0003674
GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005886GO:GO:0016020InterPro:IPR000261InterPro:IPR002048
RefSeq:NP_001185056.1PFAM:PF12763PFAM:PF13202PO:PO:0000005PO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PFscan:PS50031PFscan:PS50222PANTHER:PTHR11216PANTHER:PTHR11216:SF116
SMART:SM00027SMART:SM00054SUPFAM:SSF47473UniParc:UPI0001E92BA2SEG:seg:
Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
Coordinates
chr1:+:7581084..7588148
Molecular Weight (calculated)
135403.0 Da
IEP (calculated)
5.544
GRAVY (calculated)
-0.725
Length
1247 amino acids
Sequence
(BLAST)
0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKFSF FAFSIRRYLL PLPYGIYMKY LWICVAIVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK
0701: SGNVGSKLTI EEATFRDIQE KKMELYQAIV KFEEGKLDDS IVKRTEHIQS GLEELIKNLN ERCKQYGVRG KPTSLVELPF GWQPGIQEGA ADWDEDWDKL
0801: EDEGFTFVKE LTLDIQNVIA PPKEKSSAWR KEVDVSSKEG EDVSFSDADS KTGKKQSSGE EDSEQSEGKT SDVDARDKNG SLDDSKVRKG IEADSSPRTK
0901: DTRSENGHDD GESTASAGKT VNYDSHDETD SVSSVNPDNG KDKDHGKYDS GFGFGFGFDD FSIKPIKTGS TISNDFLPPK LSIFADSVPS PPANASDVSP
1001: TKPSLFADSV PSTPATNNAS YPGQKSFFDD SVPSTPAYPG NLFAEKKSFF DDSVPSTPAY PGNLFAEKKS YFDDSVPSTP AYSTSDFGGK PFASETPRSD
1101: NLFPGRSPFM FDSVPSTPAA HDDFSNNSFS RFDSFNSNNN DAFSLSRTDS MRSTSEPDPF ASRFDSFNYQ RYDSFNAQSY DSSSNNNASE TPKASLTRFD
1201: SIGSTRDSDY SHGFGFDDHD PFGSTGPFKT TTTTAETPRS SDNWNAF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.