Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P13420_001 | Banana | cytosol | 72.02 | 71.64 |
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 45.3 | 47.14 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 48.47 | 45.63 |
| EER92924 | Sorghum | cytosol | 49.0 | 44.4 |
| KRH74101 | Soybean | endoplasmic reticulum | 38.44 | 42.42 |
| Os03t0130500-01 | Rice | plasma membrane | 47.73 | 42.32 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 47.84 | 41.79 |
| KRH14013 | Soybean | endoplasmic reticulum | 45.62 | 41.66 |
| TraesCS4B01G324500.1 | Wheat | cytosol | 47.31 | 41.6 |
| TraesCS4D01G321600.1 | Wheat | cytosol | 47.62 | 41.41 |
| GSMUA_Achr4P11750_001 | Banana | cytosol | 46.78 | 41.29 |
| KRH60909 | Soybean | endoplasmic reticulum | 46.25 | 41.24 |
| CDY66337 | Canola | cytosol | 42.66 | 40.81 |
| CDY29508 | Canola | cytosol | 42.77 | 40.79 |
| PGSC0003DMT400025666 | Potato | cytosol | 6.97 | 40.74 |
| Bra025842.1-P | Field mustard | cytosol | 42.87 | 40.48 |
| KRH51589 | Soybean | endoplasmic reticulum | 45.72 | 40.24 |
| CDY01356 | Canola | cytosol | 41.61 | 40.2 |
| Bra012247.1-P | Field mustard | cytosol | 42.34 | 40.1 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 47.84 | 40.05 |
| CDX96625 | Canola | cytosol | 41.39 | 40.0 |
| CDY31869 | Canola | cytosol | 41.61 | 39.76 |
| AT1G20760.1 | Thale cress | cytosol | 42.77 | 39.74 |
| CDY33644 | Canola | cytosol | 40.87 | 38.93 |
| Zm00001d027503_P036 | Maize | cytosol | 43.19 | 38.55 |
| Zm00001d048338_P035 | Maize | cytosol | 44.03 | 38.43 |
| KRH74100 | Soybean | cytosol | 5.39 | 38.35 |
| Solyc02g082540.2.1 | Tomato | nucleus | 38.01 | 34.62 |
| Solyc04g082560.2.1 | Tomato | cytosol | 44.46 | 34.28 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 40.44 | 33.74 |
| CDY08192 | Canola | cytosol | 41.29 | 33.62 |
| CDY04654 | Canola | cytosol | 41.39 | 33.3 |
| Bra012288.1-P | Field mustard | cytosol | 39.81 | 33.27 |
| CDY00394 | Canola | cytosol | 39.92 | 33.04 |
| CDY38814 | Canola | cytosol | 39.81 | 32.95 |
| CDX96582 | Canola | cytosol | 39.39 | 32.63 |
| Bra016413.1-P | Field mustard | cytosol | 39.28 | 32.63 |
| CDY01320 | Canola | cytosol | 40.44 | 32.43 |
| Solyc02g082530.1.1 | Tomato | nucleus | 3.27 | 31.96 |
| AT1G21630.2 | Thale cress | cytosol | 40.97 | 31.11 |
| Bra017933.1-P | Field mustard | cytosol | 39.28 | 30.17 |
| GSMUA_Achr3P20110_001 | Banana | cytosol | 3.38 | 20.38 |
| GSMUA_Achr5P23200_001 | Banana | cytosol | 9.93 | 17.38 |
| GSMUA_Achr4P20130_001 | Banana | cytosol | 9.5 | 16.57 |
| GSMUA_Achr3P20100_001 | Banana | cytosol, endoplasmic reticulum | 7.29 | 16.05 |
| GSMUA_Achr3P01050_001 | Banana | cytosol, plastid | 9.71 | 14.7 |
| GSMUA_Achr5P23220_001 | Banana | cytosol | 7.81 | 14.62 |
| GSMUA_Achr8P13410_001 | Banana | cytosol | 0.84 | 14.04 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr5G19150_001 | EnsemblPlants:GSMUA_Achr5P19150_001 | EnsemblPlants:GSMUA_Achr5T19150_001 | InterPro:IPR000261 |
| InterPro:IPR002048 | UniProt:M0SZU4 | PFAM:PF12763 | ScanProsite:PS00018 | PFscan:PS50031 | PFscan:PS50222 |
| PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SUPFAM:SSF47473 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0002955528 | SEG:seg | : | : | : | : |
Description
EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19150_001]
Coordinates
chr5:+:20671358..20684561
Molecular Weight (calculated)
103986.0 Da
IEP (calculated)
5.337
GRAVY (calculated)
-0.677
Length
947 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLVVLYLTI IDHLFELFIV WMYADQNRTG FLGRSDFFNA LKLVTVAQSG RQLTPEIVKS ALFGPAAAKI PAPKINLASS PAPQSNSTTT PTVPTNSLRP
101: PTNQFGSIAA NSPQNLGFRP TQAPQNSFMN QQFFPTANSN VMRPPQATHP AASTPVQGGN SGLVGGGSVA GPPLPNSNNS NLSNNWRGGN LNVVSVGGAS
201: QTPIRGTIPS QNQGGILPSS KPNDTASVIV GTQSSIRPGQ LDPTQITRSL PSAGSQLQQT QSNVKQNQLD SLKMNSAMAA PNVTAGSVNP ASNQSQTQWP
301: KITQADIKKY TNVFVNVDKD RDGKITGEQT RTLFLSWKLP REVLKQVWDL SDQDNDSMLS LREFCIALYL MERYREGRPL PSVLPSGIMY DETLLRAAGM
401: PSAAYGVPTW QPGLPHQGLP GYRPVMPAAG PRPPMQTPVP SQIPGAMHSP QQNLGKPGLD NHMVNNFGKD EQHTTPKYQE WSNADNKVQE VEKQILDSKE
501: KIEFYRTKMQ ELVLYKSRCD NRLNEITERA SADRREVELL AKKYEEKYKQ VGEIASKLAI EEAKYRDIQE RKMELHNATI KMEQGGSADG LLQAGFVRVD
601: RIQSDLEELE KGLNERCKQH GVHVKSTTSI ELPFGWESGP LDMVADWDED WDKFDDEGFS IIKDLTSGVV NTVSTGEPKS PSIWDDKSSI DDNSPIASSQ
701: NVGGRNEKLD GINENMNGLA YDNGEEGSTR SPTSSPGRST IESPFNSTHF GIHDVSPRTK ESHSDQVGAE STISGDKYND EPWTFDDTDS VWKETDYESS
801: TRNAFMSHFD SMKADSPSAS SVFEKGKKNL FFDDSVPSSP LFNSASPSRF NDGRDDYGFS SFGRFDSFAT HDSGPFPAHE TFSRFDPISS SRPETLARFD
901: SVSSSREFGR GRGFESFDDA DPFDTTGPFK PSGGHSPKQG SDNWRAF
101: PTNQFGSIAA NSPQNLGFRP TQAPQNSFMN QQFFPTANSN VMRPPQATHP AASTPVQGGN SGLVGGGSVA GPPLPNSNNS NLSNNWRGGN LNVVSVGGAS
201: QTPIRGTIPS QNQGGILPSS KPNDTASVIV GTQSSIRPGQ LDPTQITRSL PSAGSQLQQT QSNVKQNQLD SLKMNSAMAA PNVTAGSVNP ASNQSQTQWP
301: KITQADIKKY TNVFVNVDKD RDGKITGEQT RTLFLSWKLP REVLKQVWDL SDQDNDSMLS LREFCIALYL MERYREGRPL PSVLPSGIMY DETLLRAAGM
401: PSAAYGVPTW QPGLPHQGLP GYRPVMPAAG PRPPMQTPVP SQIPGAMHSP QQNLGKPGLD NHMVNNFGKD EQHTTPKYQE WSNADNKVQE VEKQILDSKE
501: KIEFYRTKMQ ELVLYKSRCD NRLNEITERA SADRREVELL AKKYEEKYKQ VGEIASKLAI EEAKYRDIQE RKMELHNATI KMEQGGSADG LLQAGFVRVD
601: RIQSDLEELE KGLNERCKQH GVHVKSTTSI ELPFGWESGP LDMVADWDED WDKFDDEGFS IIKDLTSGVV NTVSTGEPKS PSIWDDKSSI DDNSPIASSQ
701: NVGGRNEKLD GINENMNGLA YDNGEEGSTR SPTSSPGRST IESPFNSTHF GIHDVSPRTK ESHSDQVGAE STISGDKYND EPWTFDDTDS VWKETDYESS
801: TRNAFMSHFD SMKADSPSAS SVFEKGKKNL FFDDSVPSSP LFNSASPSRF NDGRDDYGFS SFGRFDSFAT HDSGPFPAHE TFSRFDPISS SRPETLARFD
901: SVSSSREFGR GRGFESFDDA DPFDTTGPFK PSGGHSPKQG SDNWRAF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.