Factsheet for GSMUA_Achr3P20100_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT3G20290.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT3G20290.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT3G20290.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g01130.t01	Wine grape	cytosol	84.65	66.79
KRH73798	Soybean	cytosol	84.19	65.94
Solyc07g064910.2.1	Tomato	cytosol	83.49	65.87
PGSC0003DMT400057437	Potato	cytosol	83.49	65.87
Solyc12g014460.1.1	Tomato	cytosol	83.26	65.69
PGSC0003DMT400033476	Potato	cytosol	83.26	65.69
GSMUA_Achr5P23200_001	Banana	cytosol	82.56	65.62
AT3G20290.1	Thale cress	cytosol	82.79	65.32
PGSC0003DMT400037353	Potato	cytosol	80.93	64.09
GSMUA_Achr4P20130_001	Banana	cytosol	80.47	63.72
KRG98685	Soybean	cytosol	80.0	63.59
CDY25408	Canola	cytosol	77.44	63.43
CDY29816	Canola	cytosol	77.44	63.31
CDY50093	Canola	cytosol	78.14	63.28
Solyc10g006110.2.1	Tomato	cytosol	79.77	63.17
Bra035794.1-P	Field mustard	cytosol	76.98	63.05
CDY50090	Canola	cytosol	78.37	59.12
Bra038259.1-P	Field mustard	cytosol	78.14	58.95
GSMUA_Achr5P23220_001	Banana	cytosol	67.91	57.71
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	81.86	56.23
GSMUA_Achr3P20110_001	Banana	cytosol	4.88	13.38
GSMUA_Achr8P13420_001	Banana	cytosol	16.98	7.67
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	16.05	7.29
GSMUA_Achr4P11750_001	Banana	cytosol	16.05	6.43
GSMUA_Achr8P13410_001	Banana	cytosol	0.47	3.51

Protein Annotations

Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_SF	InterPro:EHD_N
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0006897	GO:GO:0006950
GO:GO:0008150	GO:GO:0009506	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0032456	GO:GO:0042538	GO:GO:0043231	GO:GO:0051260	EnsemblPlantsGene:GSMUA_Achr3G20100_001	EnsemblPlants:GSMUA_Achr3P20100_001
EnsemblPlants:GSMUA_Achr3T20100_001	InterPro:G_DYNAMIN_dom	InterPro:IPR030381	UniProt:M0SG76	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF16880	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI0002967C3F	SEG:seg	:	:	:	:

Description

EH domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20100_001]

Coordinates

chr3:-:21307767..21313730

Molecular Weight (calculated)

48894.3 Da

IEP (calculated)

8.012

GRAVY (calculated)

-0.213

Length

430 amino acids

Sequence
(BLAST)

001: MVGVQRNHLV IRKSLTEVTA CISLFIFFHT GFGTFIPLSQ VTSIIDGLKR LYVEKLKPLE VTYRFNDFVS PLLTNSDFDA KPMVMLLGQY STGKTTFIKH
101: LLKTSYPGAH IGPEPTTDRF VVVMSGPDER TIPGNTIAVQ ADMAFSGLTM FGTAFLSKFE CSQMPNPLLE HITFVDSPGV LSGEKQRTQR SYDFTGVTSW
201: FAAKCDLILL LFDPHKLDIS DEFKRVIGSL RGHDDKIRVV LNKSDQVDTQ QLMRVYGALM WSLGKVLNTP EVMRVYIGSF NDKPINEAAV GPLGKELFER
301: EQDDLLSDLK DIPKKACDRR INEFVKRARA AKIHSYIISH LRNEMPAMLG KAKAQQRLID NLEDEFAKVQ REYHLPAGDF PNVEHFREIL GGYSIDKFEK
401: LKPKMIQAVD DMLAYDIPEL LRNFRNPYER

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.