Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G20290.1 | KRG91803 | AT4G09570.1 | 19130088 |
AT3G20290.1 | KRH34983 | AT4G09570.1 | 19130088 |
AT3G20290.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_19s0090g01130.t01 | Wine grape | cytosol | 84.88 | 85.5 |
GSMUA_Achr3P20100_001 | Banana | cytosol, endoplasmic reticulum | 65.94 | 84.19 |
AT3G20290.1 | Thale cress | cytosol | 83.42 | 84.04 |
KRG98685 | Soybean | cytosol | 81.24 | 82.44 |
Solyc12g014460.1.1 | Tomato | cytosol | 81.79 | 82.39 |
CDY25408 | Canola | cytosol | 78.69 | 82.29 |
CDY50093 | Canola | cytosol | 79.42 | 82.11 |
Solyc07g064910.2.1 | Tomato | cytosol | 81.42 | 82.02 |
PGSC0003DMT400057437 | Potato | cytosol | 81.42 | 82.02 |
PGSC0003DMT400033476 | Potato | cytosol | 81.42 | 82.02 |
Bra035794.1-P | Field mustard | cytosol | 78.32 | 81.9 |
CDY29816 | Canola | cytosol | 78.32 | 81.75 |
PGSC0003DMT400037353 | Potato | cytosol | 79.6 | 80.48 |
Solyc10g006110.2.1 | Tomato | cytosol | 78.87 | 79.74 |
KRH51151 | Soybean | cytosol | 77.23 | 77.8 |
KRH02006 | Soybean | cytosol | 77.05 | 77.61 |
CDY50090 | Canola | cytosol | 80.15 | 77.19 |
Bra038259.1-P | Field mustard | cytosol | 79.96 | 77.02 |
KRH36524 | Soybean | cytosol | 74.68 | 76.07 |
KRH11510 | Soybean | cytosol | 74.5 | 75.88 |
KRH45544 | Soybean | cytosol | 23.32 | 54.7 |
KRH74100 | Soybean | cytosol | 6.92 | 28.57 |
KRH14013 | Soybean | endoplasmic reticulum | 21.13 | 11.19 |
KRH60909 | Soybean | endoplasmic reticulum | 20.95 | 10.83 |
KRH51589 | Soybean | endoplasmic reticulum | 20.95 | 10.69 |
KRH74101 | Soybean | endoplasmic reticulum | 13.48 | 8.62 |
Protein Annotations
Gene3D:1.10.238.10 | Gene3D:1.10.268.20 | EntrezGene:100804468 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:ACUP02001288 |
InterPro:Dynamin_SF | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:EHD_N | InterPro:EH_dom | EnsemblPlantsGene:GLYMA_02G294200 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0005525 |
InterPro:G_DYNAMIN_dom | UniProt:I1JJC9 | InterPro:IPR000261 | InterPro:IPR002048 | InterPro:IPR030381 | EnsemblPlants:KRH73798 |
ProteinID:KRH73798 | ProteinID:KRH73798.1 | InterPro:P-loop_NTPase | PFAM:PF00350 | PFAM:PF12763 | PFAM:PF16880 |
PFscan:PS50031 | PFscan:PS50222 | PFscan:PS51718 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF114 | SMART:SM00027 |
SUPFAM:SSF47473 | SUPFAM:SSF52540 | UniParc:UPI00023BC4A0 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:47256743..47263517
Molecular Weight (calculated)
61594.0 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.332
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDPIPIGS CSKEHQMIYK EWFNYADSDS DGRITGSDAT KFFAMSNLPR EDLKQVWAIA DSKRQGYLGF TEFIIAMQLV SLAQSGHSIT PDLLTSDVDF
101: TNGKPPSMEG LDVLLVKKKH KQKEVDANAI SNNAGSSQLQ PSPSSNWFSS KSTKKVPLSS VTSIIDGLKR LYIQKLKPLE VTYRFNDFVS PLLTNSDFDA
201: KPMVMLLGQY STGKTTFIKH LLKSSYPGAH IGPEPTTDRF VVVMSGSDER SVPGNTVAVQ ADMPFSGLTT FGTAFLSKFV CSQMPHPLLE HITFVDTPGV
301: LSGEKQRTQR AYDFTGVTSW FAAKCDLILL LFDPHKLDIS DEFNRVISSL RGHDDKIRVV LNKADQVDTQ QLMRVYGALM WSLGKVLKTP EVMRVYIGSF
401: NDKPVNDAAT GPLGKELFEK EQDDLLSDLK DVPKAACDRR INEFVKRARA AKIHAYIISH LKKEMPAMIG KAKAQQKLID NLAAEFGKVQ REFHLPPGDF
501: PNVEFFRERL SGYNIDKFEK LKPKMTQAVD DMLAYDIPNL LKNFRNPYD
101: TNGKPPSMEG LDVLLVKKKH KQKEVDANAI SNNAGSSQLQ PSPSSNWFSS KSTKKVPLSS VTSIIDGLKR LYIQKLKPLE VTYRFNDFVS PLLTNSDFDA
201: KPMVMLLGQY STGKTTFIKH LLKSSYPGAH IGPEPTTDRF VVVMSGSDER SVPGNTVAVQ ADMPFSGLTT FGTAFLSKFV CSQMPHPLLE HITFVDTPGV
301: LSGEKQRTQR AYDFTGVTSW FAAKCDLILL LFDPHKLDIS DEFNRVISSL RGHDDKIRVV LNKADQVDTQ QLMRVYGALM WSLGKVLKTP EVMRVYIGSF
401: NDKPVNDAAT GPLGKELFEK EQDDLLSDLK DVPKAACDRR INEFVKRARA AKIHAYIISH LKKEMPAMIG KAKAQQKLID NLAAEFGKVQ REFHLPPGDF
501: PNVEFFRERL SGYNIDKFEK LKPKMTQAVD DMLAYDIPNL LKNFRNPYD
001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
Arabidopsis Description
EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.