Factsheet for PGSC0003DMT400037353

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G20290.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006110.2.1	Tomato	cytosol	98.16	98.16
PGSC0003DMT400033476	Potato	cytosol	85.27	84.95
PGSC0003DMT400057437	Potato	cytosol	83.06	82.75
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	64.09	80.93
PGSC0003DMT400034517	Potato	cytosol	42.73	80.84
VIT_19s0090g01130.t01	Wine grape	cytosol	80.66	80.37
KRH73798	Soybean	cytosol	80.48	79.6
AT3G20290.1	Thale cress	cytosol	79.37	79.08
CDY29816	Canola	cytosol	75.32	77.76
CDY25408	Canola	cytosol	75.14	77.71
Bra035794.1-P	Field mustard	cytosol	74.95	77.52
CDY50093	Canola	cytosol	74.59	76.27
KRG98685	Soybean	cytosol	75.32	75.6
CDY50090	Canola	cytosol	75.32	71.75
Bra038259.1-P	Field mustard	cytosol	75.14	71.58
PGSC0003DMT400025666	Potato	cytosol	1.66	5.56

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048
InterPro:IPR030381	UniProt:M1B597	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880
EnsemblPlantsGene:PGSC0003DMG400014414	PGSC:PGSC0003DMG400014414	EnsemblPlants:PGSC0003DMT400037353	PFscan:PS50031	PFscan:PS50222	PFscan:PS51718
PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027	SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI000295DFA8
SEG:seg	:	:	:	:	:

Description

EH-domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014414]

Coordinates

chr10:-:1102688..1110839

Molecular Weight (calculated)

61163.3 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.396

Length

543 amino acids

Sequence
(BLAST)

001: MEFDTYPINR CSKRNEKIYQ EWFSSADSDG DGRLIGKDAT SFLAMSNLPR EDLKQVWAIA DSKRQGYLGF KEFITAMQLV SLAQAGHAVT SDFSNADVDF
101: ENLQPPTMEG LDGLLAKKKR VAKWVPDGNG SLTLSSRANW FSSSKSAKKV PSNYVTSIID GLKKLYAKKL KPLEVAYHYS DFVSPLLANS DFDAKPMVML
201: LGQYSTGKTT FIKHLLRSSY PGAHIGPEPT TDRFVVVMNG PDERSIPGNT IAVQADMPFS GLTTFGTAFL SKFECSQMPH PLLENITFVD TPGVLSGEKQ
301: RTQRSYEFTG VTSWFAAKCD LILLLFDPHK LDISDEFKRV IASLQGHDDK IRVVLNKADK VDTQQLMRVY GALMWSLGKV QNTPEVSRVY IGSFNDSPIN
401: EDLTGPLGKE LFEKEQDDLL TDLKNIPKKA CDRRINEFVK RARAAKVHAY IISHLKKEMP AMMGKSKTQK RLIDNLADEF VKIQKEHHLP AGDFPDVEHF
501: REILSGYNID KFEKLKPKLI QAVDDMLGYD IPELLKNFKN PYE

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.