CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	CDX90725	AT4G09570.1	19130088
AT3G20290.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29816	Canola	cytosol	99.43	99.24
Bra035794.1-P	Field mustard	cytosol	99.24	99.24
CDY50093	Canola	cytosol	94.1	93.03
AT3G20290.1	Thale cress	cytosol	93.9	90.46
CDY50090	Canola	cytosol	94.48	87.02
VIT_19s0090g01130.t01	Wine grape	cytosol	84.19	81.1
KRH73798	Soybean	cytosol	82.29	78.69
PGSC0003DMT400033476	Potato	cytosol	80.95	77.98
Solyc12g014460.1.1	Tomato	cytosol	80.76	77.8
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	63.43	77.44
Solyc07g064910.2.1	Tomato	cytosol	80.38	77.43
PGSC0003DMT400057437	Potato	cytosol	80.38	77.43
PGSC0003DMT400037353	Potato	cytosol	77.71	75.14
Solyc10g006110.2.1	Tomato	cytosol	76.95	74.4
KRG98685	Soybean	cytosol	76.38	74.12
CDX94536	Canola	cytosol	73.52	70.57
CDY16689	Canola	cytosol	73.33	70.51
CDX96625	Canola	cytosol	19.81	10.61
CDY66337	Canola	cytosol	20.0	10.61
CDY29508	Canola	cytosol	20.0	10.57
CDY31869	Canola	cytosol	19.81	10.49
CDY01356	Canola	cytosol	19.05	10.2
CDY33644	Canola	cytosol	19.05	10.06
CDY00394	Canola	cytosol	21.14	9.7
CDY38814	Canola	cytosol	20.95	9.62
CDY08192	Canola	cytosol	21.14	9.54
CDY04654	Canola	cytosol	21.33	9.52
CDX96582	Canola	cytosol	20.57	9.45
CDY01320	Canola	cytosol	21.14	9.4

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GLB1	UniProt:A0A078GLB1
EnsemblPlants:CDY25408	ProteinID:CDY25408	ProteinID:CDY25408.1	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00029540001	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048
InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031
PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027	SUPFAM:SSF47473
SUPFAM:SSF52540	UniParc:UPI0004EEB177	SEG:seg	:	:	:

Description

BnaA05g18760DBnaA05g18760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLB1]

Coordinates

chrLK032174:-:563811..567431

Molecular Weight (calculated)

58908.9 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.307

Length

525 amino acids

Sequence
(BLAST)

001: MEIDSVAAGS CSKENQIIYK DWFEFADSAD GDGRITGSDA IKFFSMSNLP RPELKQVWAI ADAKRQGYLG FKEFIVAMQL VSLAQTGHEI SHEVLHSDVD
101: FKNMNPPVMD GLIVLMAKKK KHSPKSSDPN GSPAADASLT AHWFSSKSSK KISLSSVTSI IDGLKRLYIQ KLKPLEVAYQ FNDFVSPLLT NSDFDAKPMV
201: MLLGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTSFGTA FLSKFECSQM PHPLLEHITF VDTPGVLSGE KQRTQRAYEF TGVTSWFASK
301: CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVAR VYIGSFSDKP INEASTGPIG RELFEMEQED
401: LLSDLKNIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLMDNLED VFGKVQREHH LPKGDFPNVD QFREVLSGYN FDKFEKLKPK
501: MLQTVDDMLG YDIPELLKNF KNPYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.