Factsheet for VIT_19s0090g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G20290.1	Thale cress	cytosol	85.69	85.69
KRH73798	Soybean	cytosol	85.5	84.88
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	66.79	84.65
VIT_00s0516g00020.t01	Wine grape	cytosol	85.14	84.36
CDY29816	Canola	cytosol	81.28	84.22
CDY25408	Canola	cytosol	81.1	84.19
Bra035794.1-P	Field mustard	cytosol	80.73	83.81
CDY50093	Canola	cytosol	81.28	83.43
Solyc07g064910.2.1	Tomato	cytosol	83.3	83.3
PGSC0003DMT400033476	Potato	cytosol	82.94	82.94
PGSC0003DMT400057437	Potato	cytosol	82.94	82.94
Solyc12g014460.1.1	Tomato	cytosol	82.94	82.94
PGSC0003DMT400037353	Potato	cytosol	80.37	80.66
KRG98685	Soybean	cytosol	79.27	79.85
Solyc10g006110.2.1	Tomato	cytosol	79.45	79.74
CDY50090	Canola	cytosol	81.47	77.89
Bra038259.1-P	Field mustard	cytosol	81.28	77.72
VIT_18s0122g01080.t01	Wine grape	cytosol	22.2	12.03
VIT_03s0038g03870.t01	Wine grape	cytosol	20.0	11.98

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	EntrezGene:100241890	wikigene:100241890	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CBI26690	ProteinID:CBI26690.3	ncoils:Coil	UniProt:D7T831	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	EMBL:FN595751	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261
InterPro:IPR002048	InterPro:IPR030381	EntrezGene:LOC100241890	wikigene:LOC100241890	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF12763	PFAM:PF16880	PFscan:PS50031	PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216
PANTHER:PTHR11216:SF114	SMART:SM00027	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI00015C7711
ArrayExpress:VIT_19s0090g01130	EnsemblPlantsGene:VIT_19s0090g01130	EnsemblPlants:VIT_19s0090g01130.t01	unigene:Vvi.1591	RefSeq:XP_002277794	RefSeq:XP_002277794.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7212128..7217546

Molecular Weight (calculated)

61234.6 Da

IEP (calculated)

7.729

GRAVY (calculated)

-0.354

Length

545 amino acids

Sequence
(BLAST)

001: MEIDSGPISS CSKQNQMIYQ EWFNFADSDS DGRITGNDAI KFFAMSNLPR PDLKQVWAIA DTKRQGFLGL KEFITAMQLV SLAQAGHAIT QDLLHSEVDL
101: GNLNPPQMEG LAALLAKKKR AHKTSDPDIN GSSQPQPSPT ASWFTSKSSK KVPLSSVTSI IDGLKRLYIQ KLKPLEVTYR FNDFASPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS SYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTIAVQADMP YSGLTTFGTA FLSKFECSQM PHSLLEHITF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFAAK CDLILLLFDP HKLDVSDEFK RVISSLHGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVMR VYIGSFNDKP
401: VNEAAVGPIG KELFEKEQEN LLSDLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPTMMGKAKT QQRLIDNLED EFAKVQREFH LPAGDFPNVD
501: HFREVLSGYS IDKFERLKPK MIQTVDDMLG YDIPELLKSF RNPYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.