CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	CDX90725	AT4G09570.1	19130088
AT3G20290.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038259.1-P	Field mustard	cytosol	99.82	99.82
CDY50093	Canola	cytosol	91.05	97.74
CDY25408	Canola	cytosol	87.02	94.48
CDY29816	Canola	cytosol	86.49	93.73
AT3G20290.1	Thale cress	cytosol	87.89	91.93
VIT_19s0090g01130.t01	Wine grape	cytosol	77.89	81.47
KRH73798	Soybean	cytosol	77.19	80.15
Solyc07g064910.2.1	Tomato	cytosol	75.44	78.9
Solyc12g014460.1.1	Tomato	cytosol	75.09	78.53
PGSC0003DMT400057437	Potato	cytosol	75.09	78.53
PGSC0003DMT400033476	Potato	cytosol	75.09	78.53
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	59.12	78.37
KRG98685	Soybean	cytosol	71.93	75.79
PGSC0003DMT400037353	Potato	cytosol	71.75	75.32
Solyc10g006110.2.1	Tomato	cytosol	71.23	74.77
CDX94536	Canola	cytosol	68.42	71.3
CDY16689	Canola	cytosol	68.25	71.25
CDX96625	Canola	cytosol	17.89	10.41
CDY66337	Canola	cytosol	18.07	10.4
CDY31869	Canola	cytosol	17.89	10.29
CDY29508	Canola	cytosol	17.89	10.27
CDY01356	Canola	cytosol	17.19	10.0
CDY33644	Canola	cytosol	17.19	9.86
CDY38814	Canola	cytosol	18.95	9.44
CDY00394	Canola	cytosol	18.95	9.44
CDY08192	Canola	cytosol	18.95	9.29
CDX96582	Canola	cytosol	18.6	9.27
CDY04654	Canola	cytosol	19.12	9.26
CDY01320	Canola	cytosol	18.95	9.14

Protein Annotations

Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IGS4	UniProt:A0A078IGS4	EnsemblPlants:CDY50090
ProteinID:CDY50090	ProteinID:CDY50090.1	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00095874001
InterPro:G_DYNAMIN_dom	InterPro:IPR002048	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF16880
PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SUPFAM:SSF47473	SUPFAM:SSF52540
UniParc:UPI0004EDC382	SEG:seg	:	:	:	:

Description

BnaC01g32650DBnaC01g32650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGS4]

Coordinates

chrLK032879:+:40567..44358

Molecular Weight (calculated)

63627.2 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.288

Length

570 amino acids

Sequence
(BLAST)

001: MEIDSVAAGS CSKENQLIYK EWFEFADSDG DGRITGSDAI KFFSMSNLPR PELKQFFGVS VNENSCCSFR RSYADADAVL ITDADLNADA VPSSMKRTRV
101: WAIADAKRQG YLGFKDFIVA MQLVSLAQTG HEISHDVLHS DVDFKNMNPP VMEGLGVLMA KKKHSSSKSN DLSVNGSPSA DASLTAHWFS SKSSKKISLS
201: SVTSIVDGLK RLYIQKLKPL EVAYRFNDFV SPLLTNSDFD AKPMVMLLGA HIGPEPTTDR FVVVMSGPDE RSIPGNTVAV QADMPFSGLT TFGTAFLSKF
301: ECSQMPHPLL EHVAFVDTPG VLSGEKQRTQ RAYDFTGVTS WFASKCDLIL LLFDPHKLDV SDEFKRVISS LRGHDDKIRV VLNKADQVDT QQLMRVYGAL
401: MWSLGKVLNT PEVSRVYIGS FSDKPINEAA TGPIGRELFE KEQDDLLADL KDIPKKACDR RINEFVKRAR AAKIHACIIS HLKKEMPAIM GKAKAQQKLI
501: DNLEDVFGKV QREHHLPKGD FPNVEQFREV LSGYNIDKFE KLKPKMLQTV DDMLGYDIPE LLKNFRNPYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.