Factsheet for Bra038259.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50090	Canola	cytosol	99.82	99.82
CDY50093	Canola	cytosol	90.88	97.55
Bra035794.1-P	Field mustard	cytosol	86.49	93.9
AT3G20290.1	Thale cress	cytosol	87.72	91.74
VIT_19s0090g01130.t01	Wine grape	cytosol	77.72	81.28
KRH73798	Soybean	cytosol	77.02	79.96
Solyc07g064910.2.1	Tomato	cytosol	75.26	78.72
PGSC0003DMT400033476	Potato	cytosol	74.91	78.35
PGSC0003DMT400057437	Potato	cytosol	74.91	78.35
Solyc12g014460.1.1	Tomato	cytosol	74.91	78.35
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	58.95	78.14
KRG98685	Soybean	cytosol	71.75	75.6
PGSC0003DMT400037353	Potato	cytosol	71.58	75.14
Solyc10g006110.2.1	Tomato	cytosol	71.05	74.59
Bra029477.1-P	Field mustard	cytosol	68.07	71.06
Bra025842.1-P	Field mustard	cytosol	18.07	10.27
Bra012247.1-P	Field mustard	cytosol	17.19	9.8
Bra012288.1-P	Field mustard	cytosol	18.95	9.53
Bra016413.1-P	Field mustard	cytosol	18.42	9.21
Bra016455.1-P	Field mustard	nucleus, plastid	17.19	8.63
Bra017933.1-P	Field mustard	cytosol	18.07	8.35

Protein Annotations

Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra038259	EnsemblPlants:Bra038259.1	EnsemblPlants:Bra038259.1-P
InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR002048	InterPro:IPR030381
UniProt:M4FAZ3	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF16880	PFscan:PS50222	PFscan:PS51718
PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI00025448FC	SEG:seg

Description

AT3G20290 (E=1e-182) ATEHD1 | ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding

Coordinates

chrA01:+:21258195..21261736

Molecular Weight (calculated)

63611.3 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.274

Length

570 amino acids

Sequence
(BLAST)

001: MEIDSVAAGS CSKENQLIYK EWFEFADSDG DGRITGSDAI KFFSMSNLPR PELKQFFGVS VNENSCCSFR RSYADADAVL ITDADLNADA VPSSMKRTRV
101: WAIADAKRQG YLGFKDFIVA MQLVSLAQTG HEISHDVLHS DVDFKNMNPP VMEGLGVLMA KKKHSSSKSN DLSVNGSPSA DASLTAHWFS SKSSKKISLS
201: SVTSIVDGLK RLYIQKLKPL EVAYRFNDFV SPLLTNSDFD AKPMVMLLGA HIGPEPTTDR FVVVMSGPDE RSIPGNTVAV QADMPFSGLT TFGTAFLSKF
301: ECSQMPHPLL EHVAFVDTPG VLSGEKQRTQ RAYDFTGVTS WFASKCDLIL LLFDPHKLDV SDEFKRVISS LRGHDDKIRV VLNKADQVDT QQLMRVYGAL
401: MWSLGKVLNT PEVSRVYIGS FSDKPINEAA TGPIGRELFE KEQDDLLADL KDIPKKACDR RINEFVKRAR AAKIHACIIS HLKKEMPAIM GKAKAQQKLI
501: DNLEDVFGKV QREHHLPKGV FPNVEQFREV LSGYNIDKFE KLKPKMLQTV DDMLGYDIPE LLKNFRNPYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.