CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	KRG91803	AT4G09570.1	19130088
AT3G20290.1	KRH34983	AT4G09570.1	19130088
AT3G20290.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73798	Soybean	cytosol	82.44	81.24
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	63.59	80.0
VIT_19s0090g01130.t01	Wine grape	cytosol	79.85	79.27
AT3G20290.1	Thale cress	cytosol	78.74	78.17
CDY50093	Canola	cytosol	75.6	77.02
Solyc12g014460.1.1	Tomato	cytosol	77.45	76.88
CDY29816	Canola	cytosol	74.49	76.62
Solyc07g064910.2.1	Tomato	cytosol	77.08	76.51
PGSC0003DMT400033476	Potato	cytosol	77.08	76.51
CDY25408	Canola	cytosol	74.12	76.38
Bra035794.1-P	Field mustard	cytosol	73.94	76.19
PGSC0003DMT400057437	Potato	cytosol	76.71	76.15
PGSC0003DMT400037353	Potato	cytosol	75.6	75.32
Solyc10g006110.2.1	Tomato	cytosol	75.05	74.77
KRH51151	Soybean	cytosol	74.86	74.31
KRH02006	Soybean	cytosol	74.68	74.13
KRH36524	Soybean	cytosol	72.27	72.54
KRH11510	Soybean	cytosol	72.27	72.54
CDY50090	Canola	cytosol	75.79	71.93
Bra038259.1-P	Field mustard	cytosol	75.6	71.75
KRH45544	Soybean	cytosol	23.29	53.85
KRH74100	Soybean	cytosol	6.47	26.32
KRH14013	Soybean	endoplasmic reticulum	19.41	10.13
KRH60909	Soybean	endoplasmic reticulum	19.41	9.89
KRH51589	Soybean	endoplasmic reticulum	19.41	9.76
KRH74101	Soybean	endoplasmic reticulum	12.38	7.81

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	EntrezGene:100816958	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010911
InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	EnsemblPlantsGene:GLYMA_18G090600
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525
InterPro:G_DYNAMIN_dom	UniProt:I1N0J5	InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	EnsemblPlants:KRG98685
ProteinID:KRG98685	ProteinID:KRG98685.1	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880
PFscan:PS50031	PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027
SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI000294EF1B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:8991445..9001857

Molecular Weight (calculated)

61289.9 Da

IEP (calculated)

8.597

GRAVY (calculated)

-0.366

Length

541 amino acids

Sequence
(BLAST)

001: MELDIVPFDS CSKEYQNLYE EWFNYADADG DGRFTGNEAI KFFAMSNLSR QELKQVWAIA DSKREGYLGF KEFVIAMQLV SLGQCGYSIT HDLLTSDAMR
101: HAKPPIMDGL DVLLTKKKRK QKDKELSVSP PHPSPTSKWF TAKSAKKVPA SSVTSIVDGL KRLYLQKLKP LEVTYHYNDF VSPLLTNSDF DAKPMVLLLG
201: QYSTGKTTFI KHMLKSSYPG AHIGPEPTTD RFVVVMSGPD ERSIPGNTIA VQADMPFSGL TTFGTSFLSK FECSQMPHPL LEHITFVDSP GVLSGEKQRT
301: HRQYDFTGVT SWFAAKCDLI LLLFDPHKLD VSDEFKRVIS SLRGHDDKIR VVLNKADQVD TQQLMRIYGA LMWSLGKVLN VPEVMRVYIG SFNDKTINDS
401: LSGPLGNELF QKEQDDLLSD LKDIPKKACD RKINEFVKRA RAAKIHAYII SHLKKQMPAM IGKAKAQQKL IDNLDTEFVK IQKEFHLPPG DFPNVEHFKE
501: TLSGYNIDKF EKLNKKMIQT VDDMLAYDVP NLLKTFRNPY G

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.