Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51589 | Soybean | endoplasmic reticulum | 93.79 | 92.57 |
| KRH74100 | Soybean | cytosol | 8.19 | 65.41 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 56.87 | 60.04 |
| AT1G20760.1 | Thale cress | cytosol | 53.3 | 55.54 |
| CDY29508 | Canola | cytosol | 51.04 | 54.58 |
| Bra025842.1-P | Field mustard | cytosol | 51.41 | 54.44 |
| CDX96625 | Canola | cytosol | 50.09 | 54.29 |
| CDY01356 | Canola | cytosol | 50.09 | 54.29 |
| CDY66337 | Canola | cytosol | 50.56 | 54.24 |
| CDY31869 | Canola | cytosol | 50.56 | 54.19 |
| Bra012247.1-P | Field mustard | cytosol | 50.94 | 54.1 |
| CDY33644 | Canola | cytosol | 49.53 | 52.92 |
| PGSC0003DMT400025666 | Potato | cytosol | 7.53 | 49.38 |
| KRH14013 | Soybean | endoplasmic reticulum | 45.76 | 46.87 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 41.71 | 46.53 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 49.44 | 46.26 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 41.24 | 46.25 |
| EER92924 | Sorghum | cytosol | 43.88 | 44.59 |
| KRH74101 | Soybean | endoplasmic reticulum | 35.78 | 44.29 |
| Os03t0130500-01 | Rice | plasma membrane | 43.97 | 43.73 |
| Solyc02g082530.1.1 | Tomato | nucleus | 3.95 | 43.3 |
| TraesCS4B01G324500.1 | Wheat | cytosol | 43.5 | 42.9 |
| Solyc04g082560.2.1 | Tomato | cytosol | 49.25 | 42.59 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 43.41 | 42.53 |
| TraesCS4D01G321600.1 | Wheat | cytosol | 43.6 | 42.52 |
| GSMUA_Achr4P11750_001 | Banana | cytosol | 41.62 | 41.19 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 43.69 | 41.03 |
| Os06t0728600-00 | Rice | plasma membrane | 32.67 | 38.81 |
| Zm00001d027503_P036 | Maize | cytosol | 38.32 | 38.36 |
| Zm00001d048338_P035 | Maize | cytosol | 39.08 | 38.25 |
| Zm00001d014862_P002 | Maize | cytosol | 40.3 | 35.34 |
| Zm00001d037125_P009 | Maize | cytosol | 39.55 | 34.77 |
| EER89004 | Sorghum | cytosol | 40.11 | 34.75 |
| TraesCS7A01G553100.1 | Wheat | cytosol | 40.68 | 33.38 |
| TraesCS7D01G539600.2 | Wheat | cytosol | 40.4 | 33.2 |
| TraesCS7B01G476800.3 | Wheat | cytosol | 40.4 | 33.03 |
| HORVU7Hr1G121230.4 | Barley | cytosol | 39.45 | 32.33 |
| KRH45544 | Soybean | cytosol | 5.46 | 24.79 |
| KRH73798 | Soybean | cytosol | 10.83 | 20.95 |
| KRH36524 | Soybean | cytosol | 10.45 | 20.59 |
| KRH11510 | Soybean | cytosol | 10.36 | 20.41 |
| KRH51151 | Soybean | cytosol | 10.36 | 20.18 |
| KRH02006 | Soybean | cytosol | 10.26 | 20.0 |
| KRG98685 | Soybean | cytosol | 9.89 | 19.41 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100818930 | MapMan:22.1.4.7 | EMBL:ACUP02002142 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom |
| InterPro:EH_dom | EnsemblPlantsGene:GLYMA_04G016600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 |
| UniProt:I1JST7 | InterPro:IPR000261 | InterPro:IPR002048 | EnsemblPlants:KRH60909 | ProteinID:KRH60909 | ProteinID:KRH60909.1 |
| PFAM:PF12763 | PFAM:PF13202 | PFscan:PS50031 | PFscan:PS50222 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 |
| SMART:SM00027 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000233A67F | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:1250589..1260487
Molecular Weight (calculated)
115619.0 Da
IEP (calculated)
4.971
GRAVY (calculated)
-0.656
Length
1062 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGPNMDQFE AFFRRADLDG DGRISGAEAV SFFQGSNLPK QVLAQVWAYA DQAKTGFLGR AEFFNALRLV TVAQSKRDLT PDIVKAALYG PAAAKIPAPQ
0101: INLAAVPQPR PNSMPGAGSV GQMGVTAPNL AQSFPYRGQG LAGPGANPQY YPSQQHPGMR PPQSMPAGGG LRPQQGVAGP DISRGVNIAG HNFSNPGVVS
0201: NDWNNVRPGM VATRPAGLTP SAALPSSTSP ISPMPQSSPI SPMPQSTTVN TKALGVSGNG FSSNSVLGND FFSAASLTPK QEPAGLSYSV SNVSSAIVPV
0301: STAPQPAIKQ NSLDSLQSAY SSMLPANSQF QRAQSAPNIS QQISPPASSS PNTPSGLGNA NSDNSHLSWP KMKPTDVQKY TKVFMEVDTD RDGKITGEQA
0401: RSLFLSWRLP IDVLKKVWDL SDQDNDSMLS LKEFCFALYL MERYREGRPL PESLPSNVLF DETLMSMIGQ PKIAYGNAGW GIGQGFQQQQ GIPGARPVAP
0501: TAGLRPPVQG SSAQADGTQQ PNQQKSGTPV LDDSFLNRAE NGEQNILNSK PQEATTAEKK FEETQNVILD SKEKLELYRN KMQELVLYKS RCDNRLNEIT
0601: ERASADKREA ESLGKKYEEK YKQVAEIVSK LTVEEAKFRD IQDRKVELQQ AIVKMVQGGS ADGILQVRAE RIQSDLEELF KALAERCKKH GLDVKSITMV
0701: QLPAGWQPGI PEGAALWDED WDKFEDEGFA NDLTYTSSKP KSAFIDGEQN LSDDNSVHGS PVNANGKQEN SANGDYTVED ESYAHSEDDL ARIPHSLAGR
0801: STVESPSQDF SNSHFGKSFE ADAETHRSFD ESTWGAFDNN DDVDSVWGFN TKTKDSDFEQ RDFFKSDDFG INPVRTGSTH TDGTFQTKSP FAFDDSVPAT
0901: PVSKFAFDDS VPATPVSKFE NSPRYSEAGD HFFDMSRFDS FRHESGYSPQ PERLTRFDSI SSSKDFGYNN HKFTRFDSIS SSKDFGSNPE TLTRFDSMSS
1001: SNDFGFGRQG HARFDSISST KDFGHSGPFS FDDSDPFGSS GPFKVSSENH SPKKGSDNWS AF
0101: INLAAVPQPR PNSMPGAGSV GQMGVTAPNL AQSFPYRGQG LAGPGANPQY YPSQQHPGMR PPQSMPAGGG LRPQQGVAGP DISRGVNIAG HNFSNPGVVS
0201: NDWNNVRPGM VATRPAGLTP SAALPSSTSP ISPMPQSSPI SPMPQSTTVN TKALGVSGNG FSSNSVLGND FFSAASLTPK QEPAGLSYSV SNVSSAIVPV
0301: STAPQPAIKQ NSLDSLQSAY SSMLPANSQF QRAQSAPNIS QQISPPASSS PNTPSGLGNA NSDNSHLSWP KMKPTDVQKY TKVFMEVDTD RDGKITGEQA
0401: RSLFLSWRLP IDVLKKVWDL SDQDNDSMLS LKEFCFALYL MERYREGRPL PESLPSNVLF DETLMSMIGQ PKIAYGNAGW GIGQGFQQQQ GIPGARPVAP
0501: TAGLRPPVQG SSAQADGTQQ PNQQKSGTPV LDDSFLNRAE NGEQNILNSK PQEATTAEKK FEETQNVILD SKEKLELYRN KMQELVLYKS RCDNRLNEIT
0601: ERASADKREA ESLGKKYEEK YKQVAEIVSK LTVEEAKFRD IQDRKVELQQ AIVKMVQGGS ADGILQVRAE RIQSDLEELF KALAERCKKH GLDVKSITMV
0701: QLPAGWQPGI PEGAALWDED WDKFEDEGFA NDLTYTSSKP KSAFIDGEQN LSDDNSVHGS PVNANGKQEN SANGDYTVED ESYAHSEDDL ARIPHSLAGR
0801: STVESPSQDF SNSHFGKSFE ADAETHRSFD ESTWGAFDNN DDVDSVWGFN TKTKDSDFEQ RDFFKSDDFG INPVRTGSTH TDGTFQTKSP FAFDDSVPAT
0901: PVSKFAFDDS VPATPVSKFE NSPRYSEAGD HFFDMSRFDS FRHESGYSPQ PERLTRFDSI SSSKDFGYNN HKFTRFDSIS SSKDFGSNPE TLTRFDSMSS
1001: SNDFGFGRQG HARFDSISST KDFGHSGPFS FDDSDPFGSS GPFKVSSENH SPKKGSDNWS AF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.