CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12085	Soybean	nucleus	93.16	85.51
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	73.82	68.41
CDY05294	Canola	cytosol	73.68	68.38
Bra029606.1-P	Field mustard	cytosol	73.42	68.05
AT3G06810.1	Thale cress	peroxisome	73.68	67.96
CDY24664	Canola	peroxisome	73.16	67.8
Solyc05g054370.2.1	Tomato	nucleus	71.32	65.38
Solyc01g066310.2.1	Tomato	nucleus	71.18	65.34
PGSC0003DMT400060245	Potato	cytosol	71.18	65.26
HORVU2Hr1G018720.2	Barley	peroxisome	66.18	63.03
GSMUA_Achr8P30030_001	Banana	cytosol	70.26	62.6
Os07t0675000-02	Rice	nucleus	67.89	62.09
TraesCS2B01G127700.1	Wheat	peroxisome	67.76	61.82
TraesCS2D01G109900.1	Wheat	golgi, unclear	67.5	61.58
TraesCS2A01G109700.1	Wheat	golgi	67.5	61.58
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	67.24	61.12
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	67.63	58.61
KRG89023	Soybean	mitochondrion	8.55	15.85
KRH24916	Soybean	mitochondrion	8.42	15.65
KRH75651	Soybean	extracellular	2.37	12.59
CDY34928	Canola	extracellular	1.97	11.72
KRH49397	Soybean	endoplasmic reticulum	5.79	10.92
KRH00268	Soybean	peroxisome	6.18	10.83
KRH65710	Soybean	peroxisome	6.05	10.53
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
EMBL:ACUP02005411	EMBL:ACUP02005412	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	EnsemblPlantsGene:GLYMA_09G042000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539	GO:GO:0050660	GO:GO:0055114
UniProt:I1L0W9	InterPro:IPR037069	EnsemblPlants:KRH37066	ProteinID:KRH37066	ProteinID:KRH37066.1	InterPro:Kinase-like_dom_sf
PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282
SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI000294D8D2	:	:

Description

hypothetical protein

Coordinates

chr9:+:3578907..3587585

Molecular Weight (calculated)

85262.2 Da

IEP (calculated)

8.222

GRAVY (calculated)

-0.317

Length

760 amino acids

Sequence
(BLAST)

001: MARNTADLAT NFNVAHHFPH DSLLRYCSSH VSGFPHPPTH FTVSQFGHGQ SNPTYLLEVG SYGSVVKRYV LRKKPPGKLL ASAHAVDREF QVLHALGTHT
101: KVPVPKVFCL CNDPTVIGTA FYIMEYLEGR IFLDPKLPGV TSQKRRAIYR ATAKALASLH SANVDSIGLG NYGRRNDYCK RQIERWAKQY VASTSEGKPA
201: SNPKMFALID WLRNQIPPED SSGATGGLVH GDFRIDNLVF HPTEDRVIGI LDWELSTLGN QMCDVAYSCM PYIADIGPEK VHEGIEHFGL PEGIPSLPEY
301: LADYCSLARR KWPVAEWKFY VAFSFFRAAS IYAGVYNRWV KGNASGGERA RHTEVLTNGL IDTAWKFIEH KSVLPQHPPS DANAQDYSKE LPNGNDIQEL
401: SNQGKFVPNQ KVLVLRNKLI KFMEEHIYPM ENEFYKLAQS DSRWTVHPVE EKLKEMAKKE GLWNLWIPLD SAVRARNLLF DGSNNYHSSD ANDLLLGAGL
501: TNLEYGYLCE IMGRSLWAPQ VFNCGAPDTG NMEVLLRYGN KEQLQEWLIP LLEGTIRSGF AMTEPHVASS DATNIECSIK RQGDSYIING TKWWTSGAMD
601: PRCRILIVMG KTDFNAAKHK QQSMILVDVK TPGIHIKRPL TVFGFDDAPH GHAEITFENV CVPAKNIILG EGRGFEIAQG RLGPGRLHHC MRLIGVAERG
701: MHMMVQRAVS RRTFGKLIAQ HGSFISDMAK CRIELESTRL LVLEAADQLD RHGTKKLEGY

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.