Factsheet for Bra029606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome, plastid
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24664	Canola	peroxisome	98.9	98.9
AT3G06810.1	Thale cress	peroxisome	93.54	93.08
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	6.1	86.21
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	75.24	75.24
KRH12085	Soybean	nucleus	74.63	73.91
KRH37066	Soybean	endoplasmic reticulum, nucleus	68.05	73.42
PGSC0003DMT400060245	Potato	cytosol	71.71	70.93
Solyc01g066310.2.1	Tomato	nucleus	71.46	70.77
Solyc05g054370.2.1	Tomato	nucleus	71.46	70.69
HORVU2Hr1G018720.2	Barley	peroxisome	68.05	69.92
TraesCS2A01G109700.1	Wheat	golgi	70.24	69.15
TraesCS2B01G127700.1	Wheat	peroxisome	70.0	68.91
Os07t0675000-02	Rice	nucleus	69.76	68.83
TraesCS2D01G109900.1	Wheat	golgi, unclear	69.88	68.79
GSMUA_Achr8P30030_001	Banana	cytosol	71.1	68.35
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	69.39	68.06
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	68.9	64.42
Bra038291.1-P	Field mustard	mitochondrion	9.39	18.83
Bra006879.1-P	Field mustard	peroxisome	7.32	13.67
Bra010066.1-P	Field mustard	cytosol, peroxisome, plasma membrane	2.07	10.06

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
InterPro:Aminoglycoside_PTrfase	EnsemblPlantsGene:Bra029606	EnsemblPlants:Bra029606.1	EnsemblPlants:Bra029606.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653
GO:GO:0009987	GO:GO:0016049	GO:GO:0016627	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767
GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069	InterPro:Kinase-like_dom_sf	UniProt:M4ELD8	PFAM:PF00441
PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282	SUPFAM:SSF47203
SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI00025480A2	SEG:seg	:	:

Description

AT3G06810 (E=0.0) IBR3 | IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase

Coordinates

chrA05:-:23027204..23031378

Molecular Weight (calculated)

91005.6 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.190

Length

820 amino acids

Sequence
(BLAST)

001: MGSNTGDLVT RVQSAHLFDH DALFRYAADN VSGFPTNPSQ FTISQFGHGQ SNPTFLIAVG SGSSLKRYVL RKKPPGKLLQ SAHAVEREFQ VLKALGEHTQ
101: VPVPKVFCLC TDPTVIGTAF YIMEFMEGRI FIDPKLPNVS PGRRTAIYRA AAKALASLHS ADVDAIGLDK YGRRANYCQR QIDRWFKQYL ASTSEGKPVR
201: NPKMFELVDW LRTSIPAEDS TGATSGLVHG DFRIDNLVFH PYEDRVIGIL DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGLETTG LPDGILSMPE
301: FLLEYCSALG KPWPAANWKF YVAFSLFRAA SIYTGVYNRW LMGNASAGER ARNTGVQANE LVECALGYIA RENVLPAHPP SGKRDVSRPS YESLVDGTGR
401: FVPNRKVLEL RGKLIKFMET HIYPMEKEFA KLAQSDLRWT VHPEEERLKE EAKRQGLWNL FIPVDSAARA RRELAAIENK QSFDQLFGEG LTNLEYGYLC
501: EIMGRSVWAP QVFNCGAPDT GNMEVILRYG NKEQIAEWLI PLLEGKIRSG FAMTEPQVAS SDATNIECSI KRQGDSYVIN GTKWWTSGAM DPRCRVLILM
601: GKTDFNAPKH KQQSMILVDM RTPGIHVKRP LTVFGFDDAP HGHAEISFEN VIVPATNILL GEGRGFEIAQ GRLGPGRLHH CMRLIGAAER GMELMAQRAL
701: SRKTFGVFIA QHGSFVSDLA KLRVELEGTR LLVLEAADHL DKFGNKKARG ILAMAKVAAP NMALKVLDTA IQVHGAAGVC SDTVLAHLWA TARTLRIADG
801: PDEVHLGTIG KLELQRASKL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.