Factsheet for PGSC0003DMT400071541

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34928	Canola	extracellular	82.76	37.5
Solyc01g066310.2.1	Tomato	nucleus	100.0	7.0
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	91.38	6.46
Os07t0675000-02	Rice	nucleus	91.38	6.38
AT3G06810.1	Thale cress	peroxisome	87.93	6.19
PGSC0003DMT400060245	Potato	cytosol	87.93	6.15
HORVU2Hr1G018720.2	Barley	peroxisome	84.48	6.14
CDY05294	Canola	cytosol	86.21	6.11
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	87.93	6.1
CDY24664	Canola	peroxisome	86.21	6.1
Bra029606.1-P	Field mustard	cytosol	86.21	6.1
GSMUA_Achr8P30030_001	Banana	cytosol	87.93	5.98
KRH12085	Soybean	nucleus	84.48	5.92
TraesCS2A01G109700.1	Wheat	golgi	84.48	5.88
TraesCS2D01G109900.1	Wheat	golgi, unclear	82.76	5.76
TraesCS2B01G127700.1	Wheat	peroxisome	82.76	5.76
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	86.21	5.7
PGSC0003DMT400069152	Potato	mitochondrion	24.14	3.4
PGSC0003DMT400020955	Potato	mitochondrion	20.69	2.91
PGSC0003DMT400049359	Potato	peroxisome	13.79	1.82
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	13.79	1.82
KRH37066	Soybean	endoplasmic reticulum, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400071541	EnsemblPlantsGene:PGSC0003DMG400027831	Gene3D:1.20.140.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016627	GO:GO:0055114	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	PANTHER:PTHR10909
PANTHER:PTHR10909:SF282	PFAM:PF00441	PGSC:PGSC0003DMG400027831	SUPFAM:SSF47203	UniParc:UPI000295B526	UniProt:M1CNY1
MapMan:35.1	:	:	:	:	:

Description

IBR3 (IBA-RESPONSE 3) [Source:PGSC_GENE;Acc:PGSC0003DMG400027831]

Coordinates

chr1:+:57039607..57040458

Molecular Weight (calculated)

6178.6 Da

IEP (calculated)

7.809

GRAVY (calculated)

0.160

Length

58 amino acids

Sequence
(BLAST)

1: MALKVLDTAM QVHGGAGLSG DTVLAHLWAT ARTLRIADGP DEVHLGTIAK MELQRARL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.