Factsheet for PGSC0003DMT400028641

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 2
peroxisome 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085200.1.1	Tomato	peroxisome	94.31	99.28
KRH49397	Soybean	endoplasmic reticulum	76.54	83.37
PGSC0003DMT400049359	Potato	peroxisome	83.37	83.37
KRH00268	Soybean	peroxisome	80.64	81.57
KRH65710	Soybean	peroxisome	80.18	80.55
VIT_08s0105g00460.t01	Wine grape	peroxisome	79.95	78.7
AT3G51840.1	Thale cress	peroxisome	77.45	77.98
GSMUA_Achr8P21130_001	Banana	peroxisome	76.77	77.29
CDX78043	Canola	peroxisome	76.77	76.77
CDX73688	Canola	peroxisome	76.54	76.54
Bra006879.1-P	Field mustard	peroxisome	76.31	76.31
CDX95301	Canola	peroxisome	75.85	75.85
CDY23164	Canola	peroxisome	75.4	75.4
Os05t0163700-01	Rice	cytosol, mitochondrion, peroxisome	71.98	73.49
TraesCS1A01G110300.1	Wheat	peroxisome	73.12	73.46
TraesCS1D01G111900.1	Wheat	golgi, nucleus, plastid, unclear	72.89	73.23
TraesCS1B01G129300.1	Wheat	peroxisome	72.89	73.23
EES17775	Sorghum	cytosol, mitochondrion, peroxisome	72.21	73.21
Os01t0159400-01	Rice	nucleus	71.53	72.52
OQU86270	Sorghum	peroxisome	71.53	71.85
Zm00001d037521_P002	Maize	peroxisome	71.75	71.59
OQU77505	Sorghum	peroxisome	69.7	70.02
Zm00001d039768_P003	Maize	mitochondrion	70.61	68.74
HORVU1Hr1G024240.1	Barley	mitochondrion, peroxisome, plastid	73.35	68.08
KRH75651	Soybean	extracellular	11.16	34.27
PGSC0003DMT400069152	Potato	mitochondrion	22.78	24.27
PGSC0003DMT400020955	Potato	mitochondrion	21.41	22.82
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	1.82	13.79
PGSC0003DMT400060245	Potato	cytosol	13.9	7.36

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:102579351	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	InterPro:Acyl-CoA_DH_CS
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069
UniProt:M1ARF6	PFAM:PF00441	PFAM:PF02770	PFAM:PF02771	EnsemblPlantsGene:PGSC0003DMG400011023	PGSC:PGSC0003DMG400011023
EnsemblPlants:PGSC0003DMT400028641	ScanProsite:PS00073	PANTHER:PTHR43188	PANTHER:PTHR43188:SF1	SUPFAM:SSF47203	SUPFAM:SSF56645
UniParc:UPI0002965B07	RefSeq:XP_006338982.1	RefSeq:XP_006338983.1	SEG:seg	:	:

Description

Acyl-CoA dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400011023]

Coordinates

chr10:-:53859957..53864341

Molecular Weight (calculated)

48375.6 Da

IEP (calculated)

7.962

GRAVY (calculated)

-0.068

Length

439 amino acids

Sequence
(BLAST)

001: MRTNIDHAAA KMHKEAKSSY FDMPALDVSV AFPQATPASN FPPCTSDYYQ LADLLTPEEQ AIRMKVREYM EKEIAPIMTK YWEKAEFPFE IIPKFGALHI
101: AGGTIKGYGC PGHSITGSAV AAAEVARVDA SCSTFLLVHS SLAMLTIGLC GSEMQKEKYL PSLAEFDTIA CWGLTEPDYG SDASGLGTTA KKVEGGWILE
201: GQKRWIGNST FADILVIFAR NTSTNQINGF IVKKDAPGLQ CTKIENKIGL RIVQNGDILL KNVFVPDEDR LPGVNSFQDT NKVLAVSRVM VAWQPIGITM
301: GVYDMCHRYL KERKQFGAPL AAFQINQQKL VQMLSNIQAM ILVGWRLCKL HESDKLTHGH ASLGKSWITL RARETVALGR ELLGGNGILA DFHVAKAFCD
401: LEPIYTFEGT YDINTLVTGR EITGLASFKP APVRQKSRL

Best Arabidopsis Sequence Match ( AT3G51840.1 )
(BLAST)

001: MAVLSSADRA SNEKKVKSSY FDLPPMEMSV AFPQATPAST FPPCTSDYYH FNDLLTPEEQ AIRKKVRECM EKEVAPIMTE YWEKAEFPFH ITPKLGAMGV
101: AGGSIKGYGC PGLSITANAI ATAEIARVDA SCSTFILVHS SLGMLTIALC GSEAQKEKYL PSLAQLNTVA CWALTEPDNG SDASGLGTTA TKVEGGWKIN
201: GQKRWIGNST FADLLIIFAR NTTTNQINGF IVKKDAPGLK ATKIPNKIGL RMVQNGDILL QNVFVPDEDR LPGVNSFQDT SKVLAVSRVM VAWQPIGISM
301: GIYDMCHRYL KERKQFGAPL AAFQLNQQKL VQMLGNVQAM FLMGWRLCKL YETGQMTPGQ ASLGKAWISS KARETASLGR ELLGGNGILA DFLVAKAFCD
401: LEPIYTYEGT YDINTLVTGR EVTGIASFKP ATRSRL

Arabidopsis Description

ACX4Acyl-coenzyme A oxidase 4, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q96329]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.