CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 1
peroxisome 5
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	peroxisome
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	peroxisome

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00268	Soybean	peroxisome	95.78	88.94
KRH65710	Soybean	peroxisome	89.08	82.15
Solyc10g085200.1.1	Tomato	peroxisome	82.88	80.1
VIT_08s0105g00460.t01	Wine grape	peroxisome	85.61	77.35
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	83.37	76.54
AT3G51840.1	Thale cress	peroxisome	80.65	74.54
CDX73688	Canola	peroxisome	80.65	74.03
PGSC0003DMT400049359	Potato	peroxisome	80.65	74.03
Bra006879.1-P	Field mustard	peroxisome	80.15	73.58
CDX78043	Canola	peroxisome	80.15	73.58
Solyc10g076600.1.1	Tomato	peroxisome	79.9	73.35
GSMUA_Achr8P21130_001	Banana	peroxisome	78.66	72.71
CDX95301	Canola	peroxisome	79.16	72.67
CDY23164	Canola	peroxisome	78.66	72.21
Os05t0163700-01	Rice	cytosol, mitochondrion, peroxisome	75.43	70.7
EES17775	Sorghum	cytosol, mitochondrion, peroxisome	75.68	70.44
TraesCS1D01G111900.1	Wheat	golgi, nucleus, plastid, unclear	75.68	69.79
TraesCS1B01G129300.1	Wheat	peroxisome	75.68	69.79
TraesCS1A01G110300.1	Wheat	peroxisome	75.68	69.79
Os01t0159400-01	Rice	nucleus	74.69	69.52
Zm00001d037521_P002	Maize	peroxisome	75.68	69.32
OQU86270	Sorghum	peroxisome	73.95	68.19
OQU77505	Sorghum	peroxisome	71.71	66.13
Zm00001d039768_P003	Maize	mitochondrion	73.7	65.85
HORVU1Hr1G024240.1	Barley	mitochondrion, peroxisome, plastid	75.93	64.69
KRH75651	Soybean	extracellular	11.91	33.57
KRG89023	Soybean	mitochondrion	22.83	22.44
KRH24916	Soybean	mitochondrion	22.58	22.25
KRH12085	Soybean	nucleus	12.66	6.16
KRH37066	Soybean	endoplasmic reticulum, nucleus	10.92	5.79

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	EMBL:ACUP02004361	InterPro:Acyl-CoA_DH_CS
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
EnsemblPlantsGene:GLYMA_07G151500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114
InterPro:IPR037069	UniProt:K7L1W0	EnsemblPlants:KRH49397	ProteinID:KRH49397	ProteinID:KRH49397.1	PFAM:PF00441
PFAM:PF02770	PFAM:PF02771	ScanProsite:PS00073	PANTHER:PTHR43188	PANTHER:PTHR43188:SF1	SUPFAM:SSF47203
SUPFAM:SSF56645	UniParc:UPI000295CE54	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:18389352..18393641

Molecular Weight (calculated)

44470.3 Da

IEP (calculated)

9.024

GRAVY (calculated)

0.041

Length

403 amino acids

Sequence
(BLAST)

001: MKMPSYFNLP ALDVSVAFPQ ATPASNFPPC ASDYFHFNDL LKPEEQAVRN KVRECMEKEI APIMTEYWEK AEFPFHVIPK FAALRIAGGT IKGYGCPGLS
101: ITGSAVATAE VARVDASCST FYLVHSSLAM LTIALCGSEA QKQKYLPSLA QMKTIACWVG GGWILDGQKR WIGNSTFADL LVIFARNTTT NQINGYIVKK
201: DAPGLTVTKM ENKIGLRIVQ NGDIVMRKVF VPDDDRIEGV NSFQDTNKVL AVSRVMVAWQ PIGLSMGIYD MCHRYLKERK QFGAPLAAFQ ISQQKLVQML
301: GNIQAMILVG WRLCKLYESG KMTPGHASLG KSWITLRARE TAALGRELLG GNGILADFLV AKAFCDIEPI YTFEGTYDIN TLVTGREVTG FASFKSVAQK
401: SRL

Best Arabidopsis Sequence Match ( AT3G51840.1 )
(BLAST)

001: MAVLSSADRA SNEKKVKSSY FDLPPMEMSV AFPQATPAST FPPCTSDYYH FNDLLTPEEQ AIRKKVRECM EKEVAPIMTE YWEKAEFPFH ITPKLGAMGV
101: AGGSIKGYGC PGLSITANAI ATAEIARVDA SCSTFILVHS SLGMLTIALC GSEAQKEKYL PSLAQLNTVA CWALTEPDNG SDASGLGTTA TKVEGGWKIN
201: GQKRWIGNST FADLLIIFAR NTTTNQINGF IVKKDAPGLK ATKIPNKIGL RMVQNGDILL QNVFVPDEDR LPGVNSFQDT SKVLAVSRVM VAWQPIGISM
301: GIYDMCHRYL KERKQFGAPL AAFQLNQQKL VQMLGNVQAM FLMGWRLCKL YETGQMTPGQ ASLGKAWISS KARETASLGR ELLGGNGILA DFLVAKAFCD
401: LEPIYTYEGT YDINTLVTGR EVTGIASFKP ATRSRL

Arabidopsis Description

ACX4Acyl-coenzyme A oxidase 4, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q96329]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.