CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89023	Soybean	mitochondrion	90.71	90.49
VIT_06s0004g03140.t01	Wine grape	mitochondrion	88.51	89.6
HORVU1Hr1G013820.4	Barley	mitochondrion	81.91	85.03
PGSC0003DMT400020955	Potato	mitochondrion	85.09	84.47
GSMUA_Achr6P08800_001	Banana	mitochondrion	84.35	84.35
Solyc11g069180.1.1	Tomato	plastid	84.35	83.74
AT3G45300.1	Thale cress	mitochondrion	83.62	83.62
Bra038291.1-P	Field mustard	mitochondrion	83.37	83.37
CDY53838	Canola	mitochondrion	83.37	83.37
Zm00001d035475_P001	Maize	mitochondrion	79.46	83.33
Os05t0125500-01	Rice	mitochondrion	83.13	83.13
TraesCS1A01G066800.2	Wheat	mitochondrion	82.4	82.6
TraesCS1B01G085100.1	Wheat	mitochondrion	82.4	82.6
TraesCS1D01G067800.2	Wheat	mitochondrion	82.89	81.88
PGSC0003DMT400069152	Potato	mitochondrion	82.15	81.55
Solyc06g073560.2.1	Tomato	mitochondrion	81.42	80.83
EES18942	Sorghum	mitochondrion	73.35	80.21
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	82.4	72.63
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	81.42	59.57
KRH65710	Soybean	peroxisome	26.16	24.49
KRH49397	Soybean	endoplasmic reticulum	22.25	22.58
KRH00268	Soybean	peroxisome	23.96	22.58
KRH75651	Soybean	extracellular	6.6	18.88
KRH12085	Soybean	nucleus	19.32	9.54
KRH37066	Soybean	endoplasmic reticulum, nucleus	15.65	8.42

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:100784046	Gene3D:2.40.110.10	MapMan:4.2.7.3
EMBL:ACUP02007190	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	EnsemblPlantsGene:GLYMA_12G071100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003995	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016627
GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069	InterPro:IVD	UniProt:K7LTG4	EnsemblPlants:KRH24916
ProteinID:KRH24916	ProteinID:KRH24916.1	PFAM:PF00441	PFAM:PF02770	PFAM:PF02771	PIRSF:PIRSF016578
ScanProsite:PS00072	ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	SUPFAM:SSF47203	SUPFAM:SSF56645
UniParc:UPI000233C179	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:5204211..5217887

Molecular Weight (calculated)

44634.7 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.122

Length

409 amino acids

Sequence
(BLAST)

001: MHRISTAGYI FSAVFRRKSQ PHSAAFSTSL LFDETQIQFK ESVAQFATEN IAPHASKIDH TNYFPKEVNL WKSMGEFNLL GITAPEEYGG LGLGYLYHCI
101: AMEEISRASG SVGLSYGAHS NLCINQLVRN GSPVQKEKYL PKLISGDHVG ALAMSEPNSG SDVVSMKCKA DRVDGGYVLN GNKMWCTNGP VAQTLVVYAK
201: TDITAGSKGI TAFIIEKGMP GFNTAQKLDK LGMRGSDTCE LVFENCFVPD ENVLGKEGKG VYVMMSGLDL ERLVLAAGPL GIMQACLDVV LPYVRQREQF
301: GRPIGEFQFI QGKIADMYTS LQSSRSYVYS VARDCDNGKI DPKDCAGAIL CAAERATQVA LQAIQCLGGN GYVNEYPTGR LLRDAKLYEI GAGTSEIRRM
401: IIGRELFKE

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.