CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

mitochondrion 2
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion
BaCelLo:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038291.1-P	Field mustard	mitochondrion	83.84	95.11
CDY53838	Canola	mitochondrion	83.84	95.11
AT3G45300.1	Thale cress	mitochondrion	79.09	89.73
VIT_06s0004g03140.t01	Wine grape	mitochondrion	72.84	83.66
KRH24916	Soybean	mitochondrion	72.63	82.4
Os05t0125500-01	Rice	mitochondrion	72.41	82.15
Zm00001d035475_P001	Maize	mitochondrion	68.1	81.03
KRG89023	Soybean	mitochondrion	71.34	80.73
HORVU1Hr1G013820.4	Barley	mitochondrion	68.32	80.46
GSMUA_Achr6P08800_001	Banana	mitochondrion	70.91	80.44
Solyc11g069180.1.1	Tomato	plastid	70.91	79.85
PGSC0003DMT400020955	Potato	mitochondrion	70.91	79.85
EES18942	Sorghum	mitochondrion	64.22	79.68
TraesCS1B01G085100.1	Wheat	mitochondrion	70.04	79.66
TraesCS1A01G066800.2	Wheat	mitochondrion	70.04	79.66
PGSC0003DMT400069152	Potato	mitochondrion	70.69	79.61
Solyc06g073560.2.1	Tomato	mitochondrion	70.26	79.13
TraesCS1D01G067800.2	Wheat	mitochondrion	70.26	78.74
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	70.69	58.68
CDX73688	Canola	peroxisome	21.34	22.55
CDX78043	Canola	peroxisome	21.34	22.55
CDX95301	Canola	peroxisome	21.34	22.55
CDY23164	Canola	peroxisome	21.12	22.32
CDY34928	Canola	extracellular	4.96	17.97
CDY64742	Canola	cytosol, mitochondrion, plastid	4.96	13.29
CDY59727	Canola	extracellular, peroxisome, plastid	3.02	10.94
CDY05294	Canola	cytosol	17.24	9.77
CDY24664	Canola	peroxisome	17.24	9.76
CDX73320	Canola	plastid	4.96	9.58
CDY59726	Canola	cytosol	1.51	8.14

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:4.2.7.3	GO:A0A078DFF6
InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	EnsemblPlants:CDX86013	ProteinID:CDX86013	ProteinID:CDX86013.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016627
GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00143938001	InterPro:IPR037069	InterPro:IVD	PFAM:PF00441
PFAM:PF02770	PFAM:PF02771	ScanProsite:PS00072	ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF18
SUPFAM:SSF47203	SUPFAM:SSF56645	SignalP:SignalP-noTM	UniParc:UPI0004EE8653	SEG:seg	:

Description

BnaC03g55280D

Coordinates

chrLK031844:-:176150..180018

Molecular Weight (calculated)

50838.6 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.136

Length

464 amino acids

Sequence
(BLAST)

001: MICCLILSSV LGTLRLSCKV VIWKGEDREK MSAIGHFGKG QRLYNTKAAE ISKKMQRLFA ARSVLGNAVK TRRRQHLSSL SSSLLFDETQ LQFKESVSKF
101: AQDVIAPHAE RIDKTNSFPK DVNLWKLMGE FNLHGITAPE EYGGLGLGYL YHCIAMEEIS RASGSVALSY GAHSNLCINQ LVRNGNTSQK HKYLPKLISG
201: EHVGALAMSE PNAGSDVVSM KCKADKVDGG FLINGNKMWC TNGPSAETLI VYAKTDTKAG SKGITAFVIE KEMAGFSTAQ KLDKLGMRGS DTCELVFENC
301: FVPEENILGK EGKGVYVLMS GLDLERLVLA AGPLGIMQAC LDIVLPYIRQ REQFGRPVGE FQFIQGKVAD MYTALQSSRS YVYSVARECD NGKVDPKDCA
401: GTILCAAERA TQVALQAIQC LGGNGYINEY ATGRLLRDAK LYEIGAGTSE IRRMVIGREL FKEQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.