Factsheet for Solyc11g069180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020955	Potato	mitochondrion	94.17	94.17
VIT_06s0004g03140.t01	Wine grape	mitochondrion	84.22	85.89
KRH24916	Soybean	mitochondrion	83.74	84.35
GSMUA_Achr6P08800_001	Banana	mitochondrion	82.04	82.64
KRG89023	Soybean	mitochondrion	80.83	81.22
AT3G45300.1	Thale cress	mitochondrion	80.34	80.93
Bra038291.1-P	Field mustard	mitochondrion	80.1	80.68
CDY53838	Canola	mitochondrion	80.1	80.68
Zm00001d035475_P001	Maize	mitochondrion	76.21	80.51
Solyc06g073560.2.1	Tomato	mitochondrion	80.34	80.34
Os05t0125500-01	Rice	mitochondrion	79.37	79.95
HORVU1Hr1G013820.4	Barley	mitochondrion	76.46	79.95
TraesCS1A01G066800.2	Wheat	mitochondrion	78.16	78.92
TraesCS1B01G085100.1	Wheat	mitochondrion	78.16	78.92
TraesCS1D01G067800.2	Wheat	mitochondrion	78.64	78.26
EES18942	Sorghum	mitochondrion	70.63	77.81
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	79.85	70.91
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	78.16	57.6
Solyc10g076600.1.1	Tomato	peroxisome	24.76	23.23
Solyc10g085200.1.1	Tomato	peroxisome	23.3	23.02
Solyc01g066310.2.1	Tomato	nucleus	18.2	9.06
Solyc05g054370.2.1	Tomato	nucleus	17.96	8.93

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:4.2.7.3	InterPro:Acyl-CoA_DH_CS
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069
InterPro:IVD	UniProt:K4DA74	PFAM:PF00441	PFAM:PF02770	PFAM:PF02771	PIRSF:PIRSF016578
ScanProsite:PS00072	ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	SUPFAM:SSF47203	SUPFAM:SSF56645
EnsemblPlantsGene:Solyc11g069180.1	EnsemblPlants:Solyc11g069180.1.1	UniParc:UPI000276A92C	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:53809179..53816307

Molecular Weight (calculated)

45309.6 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.139

Length

412 amino acids

Sequence
(BLAST)

001: MHKLFIARSV KSALFRIRNQ QKPQFAAFST SLLFDDTQKQ FKESVAQFAQ ENIAPHAEKI DRTNYFPQDV NLWKLMGDFN LLGITVPEEY GGLGLGYLYH
101: CIAMEEISRA SGSVGLSYGA HTNLCINQLV RNGTHEQKQK FLPKLISGEH VGALAMSEPN AGSDVVSMKC KADHVEGGYV LNGNKMWCTN GPTAQTLVVY
201: AKTDVTAGSK GITAFIIEKE MTGFSTAQKL DKLGMRGSDT CELVFENCFV PEENVLGQVG KGVYVLMSGL DLERLVLASG PVGIMQACLD VVLPYVKQRE
301: QFGRPIGEFQ FVQGKVADMY TSMQSSRSYL YSVARECDSG TINTKDCAGV ILSAAERATQ VALQAIQCLG GNGYVNEYPT GRFLRDAKLY EIGAGTSEIR
401: RMIIGRELFK EQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.