Factsheet for VIT_06s0004g03140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24916	Soybean	mitochondrion	89.6	88.51
KRG89023	Soybean	mitochondrion	86.88	85.61
GSMUA_Achr6P08800_001	Banana	mitochondrion	86.63	85.57
PGSC0003DMT400020955	Potato	mitochondrion	86.14	84.47
AT3G45300.1	Thale cress	mitochondrion	85.4	84.35
Solyc11g069180.1.1	Tomato	plastid	85.89	84.22
CDY53838	Canola	mitochondrion	84.9	83.86
Bra038291.1-P	Field mustard	mitochondrion	84.65	83.62
Os05t0125500-01	Rice	mitochondrion	84.41	83.37
Zm00001d035475_P001	Maize	mitochondrion	80.45	83.33
HORVU1Hr1G013820.4	Barley	mitochondrion	80.94	82.99
TraesCS1A01G066800.2	Wheat	mitochondrion	83.17	82.35
TraesCS1B01G085100.1	Wheat	mitochondrion	83.17	82.35
PGSC0003DMT400069152	Potato	mitochondrion	83.66	82.04
TraesCS1D01G067800.2	Wheat	mitochondrion	83.66	81.64
Solyc06g073560.2.1	Tomato	mitochondrion	83.17	81.55
EES18942	Sorghum	mitochondrion	75.25	81.28
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	83.66	72.84
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	82.92	59.93
VIT_08s0105g00460.t01	Wine grape	peroxisome	25.5	23.09
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	19.8	9.76

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:100265639	wikigene:100265639	Gene3D:2.40.110.10
MapMan:4.2.7.3	EMBL:AM460977	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf
InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	ProteinID:CAN70218	ProteinID:CAN70218.1	ProteinID:CBI16286
ProteinID:CBI16286.3	UniProt:D7SKV8	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003995	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006552	GO:GO:0008150	GO:GO:0008152
GO:GO:0008470	GO:GO:0009056	GO:GO:0009083	GO:GO:0009987	GO:GO:0016491	GO:GO:0016627
GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069	InterPro:IVD	EntrezGene:LOC100265639	wikigene:LOC100265639
PFAM:PF00441	PFAM:PF02770	PFAM:PF02771	PIRSF:PIRSF016578	ScanProsite:PS00072	ScanProsite:PS00073
PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	SUPFAM:SSF47203	SUPFAM:SSF56645	TIGR:TC57996	UniParc:UPI0001BE1028
ArrayExpress:VIT_06s0004g03140	EnsemblPlantsGene:VIT_06s0004g03140	EnsemblPlants:VIT_06s0004g03140.t01	unigene:Vvi.8864	RefSeq:XP_002285017	RefSeq:XP_002285017.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3888870..3899160

Molecular Weight (calculated)

44478.7 Da

IEP (calculated)

7.334

GRAVY (calculated)

-0.127

Length

404 amino acids

Sequence
(BLAST)

001: MLRVFSARSL FRKDRLRAAF STALLFDDTQ IQFKESIAQF AQENIAPHAS RIDRTNYFPE EVNLWKLMGD FNLHGITAPE EYGGLGLGYL YHCIAMEEIS
101: RASGSVALSY GAHSNLCINQ LVRNGNPAQK QKYLPKLISG EHVGALAMSE PNAGSDVVSM KCKADRVDGG YILNGNKMWC TNGPIAQTLV VYAKTDITAH
201: SKGITAFIIE KGMPGFSTAQ KLDKLGMRGS DTCELVFENC FVPEENVLGQ EGKGVYVMMS GLDLERLVLA AGPLGLMQAC IDVVLPYVRQ REQFGRPIGE
301: FQFIQGKLAD MYTSLQSSRS YVYSVARNCE NGKIDPKDCA GVILCAAERA TQVALQAIQC LGGNGYVNEY PTGRLLRDAK LYEIGAGTSE IRRMIIGREL
401: FKEQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.