Factsheet for PGSC0003DMT400069152

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	mitochondrion
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073560.2.1	Tomato	mitochondrion	96.84	96.84
VIT_06s0004g03140.t01	Wine grape	mitochondrion	82.04	83.66
KRH24916	Soybean	mitochondrion	81.55	82.15
CDY53838	Canola	mitochondrion	80.34	80.93
PGSC0003DMT400020955	Potato	mitochondrion	80.83	80.83
GSMUA_Achr6P08800_001	Banana	mitochondrion	80.1	80.68
Bra038291.1-P	Field mustard	mitochondrion	79.85	80.44
AT3G45300.1	Thale cress	mitochondrion	79.85	80.44
KRG89023	Soybean	mitochondrion	79.61	80.0
Zm00001d035475_P001	Maize	mitochondrion	74.51	78.72
HORVU1Hr1G013820.4	Barley	mitochondrion	74.51	77.92
Os05t0125500-01	Rice	mitochondrion	76.7	77.26
TraesCS1A01G066800.2	Wheat	mitochondrion	76.46	77.21
TraesCS1B01G085100.1	Wheat	mitochondrion	75.73	76.47
EES18942	Sorghum	mitochondrion	68.93	75.94
TraesCS1D01G067800.2	Wheat	mitochondrion	76.21	75.85
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	79.61	70.69
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	76.21	56.17
PGSC0003DMT400049359	Potato	peroxisome	25.97	24.37
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	3.4	24.14
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	24.27	22.78
PGSC0003DMT400060245	Potato	cytosol	20.15	10.01

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:102589539	Gene3D:2.40.110.10	MapMan:4.2.7.3
EMBL:AJ278987	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	ProteinID:CAC08233	ProteinID:CAC08233.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003853	GO:GO:0003995	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	GO:GO:1902190
GO:GO:1902192	InterPro:IPR037069	InterPro:IVD	RefSeq:NP_001275043.1	PFAM:PF00441	PFAM:PF02770
PFAM:PF02771	EnsemblPlantsGene:PGSC0003DMG400026901	PGSC:PGSC0003DMG400026901	EnsemblPlants:PGSC0003DMT400069152	PIRSF:PIRSF016578	ScanProsite:PS00072
ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	UniProt:Q9FS88	SUPFAM:SSF47203	SUPFAM:SSF56645
UniParc:UPI0002953D5A	:	:	:	:	:

Description

2MBCD2-methylacyl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FS88]

Coordinates

chr6:-:54061915..54066400

Molecular Weight (calculated)

45088.4 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.138

Length

412 amino acids

Sequence
(BLAST)

001: MHKLFAVRSL SSAIVKSFKS LQNQQAAFST SLLLDDTQKQ FKESVAKFAQ ENIAPYAEKI DRTNSFPKEI NLWKLMGDFN LHGITAPEEY GGLNLGYLYH
101: CIALEEISRA SGAVAVSYGV QSNVCINQLV RNGTPDQKQK YLPKLISGDH IGALAMSEPN AGSDVVSMKC RADRVDGGYV LNGNKMWCTN GPVANTLIVY
201: AKTDTTAGSK GITAFIIEKE MPGFSTAQKL DKLGMRGSDT CELVFENCFV PNENVLGQEG KGVYVLMSGL DLERLVLAAG PVGIMQACMD IVIPYVRQRE
301: QFGRPIGEFQ LIQGKLADMY TALQSSRSYV YAVAKDCDNG KIDPKDCSGT ILLAAERATQ VALQAIQCLG GNGYINEYPT GRLLRDAKMY EIAAGTSEIR
401: RLVIGRELFK HQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.