CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24916	Soybean	mitochondrion	90.49	90.71
VIT_06s0004g03140.t01	Wine grape	mitochondrion	85.61	86.88
HORVU1Hr1G013820.4	Barley	mitochondrion	81.22	84.52
Zm00001d035475_P001	Maize	mitochondrion	79.27	83.33
TraesCS1A01G066800.2	Wheat	mitochondrion	82.44	82.84
GSMUA_Achr6P08800_001	Banana	mitochondrion	82.2	82.4
AT3G45300.1	Thale cress	mitochondrion	81.95	82.15
TraesCS1B01G085100.1	Wheat	mitochondrion	81.71	82.11
Os05t0125500-01	Rice	mitochondrion	81.71	81.91
TraesCS1D01G067800.2	Wheat	mitochondrion	82.68	81.88
Bra038291.1-P	Field mustard	mitochondrion	81.46	81.66
CDY53838	Canola	mitochondrion	81.46	81.66
PGSC0003DMT400020955	Potato	mitochondrion	81.46	81.07
Solyc11g069180.1.1	Tomato	plastid	81.22	80.83
PGSC0003DMT400069152	Potato	mitochondrion	80.0	79.61
EES18942	Sorghum	mitochondrion	71.95	78.88
Solyc06g073560.2.1	Tomato	mitochondrion	78.78	78.4
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	80.73	71.34
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	80.24	58.86
KRH65710	Soybean	peroxisome	26.1	24.49
KRH49397	Soybean	endoplasmic reticulum	22.44	22.83
KRH00268	Soybean	peroxisome	24.15	22.81
KRH75651	Soybean	extracellular	6.83	19.58
KRH12085	Soybean	nucleus	19.76	9.78
KRH37066	Soybean	endoplasmic reticulum, nucleus	15.85	8.55

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:100794259	Gene3D:2.40.110.10	MapMan:4.2.7.3
InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	EnsemblPlantsGene:GLYMA_U019900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660
GO:GO:0055114	UniProt:I1LKD6	InterPro:IPR037069	InterPro:IVD	EnsemblPlants:KRG89023	ProteinID:KRG89023
ProteinID:KRG89023.1	PFAM:PF00441	PFAM:PF02770	PFAM:PF02771	PIRSF:PIRSF016578	ScanProsite:PS00072
ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI000233D6D7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:-:3300287..3307104

Molecular Weight (calculated)

44722.7 Da

IEP (calculated)

7.334

GRAVY (calculated)

-0.158

Length

410 amino acids

Sequence
(BLAST)

001: MHRINTARSI FSAVFRSKSR PHSAAFSTSL LFDETQTQFK ESVAQFATEN IAPHASKIDQ TNYFPKEVNL WKSMGEFNLL GITAPEEYGG LGLGYLYHCI
101: AMEEISRASG SVGLSYGAHS NLCINQLVRN GSPAQKEKYL PKLISGDHVG ALAMSEPNSG SDVVSMKCKA DRVDGGYVLN GNKMWCTNGP VAQTLVVYAK
201: TDITAGSKGI TAFIIEKGMP GFNTAQKLDK LGMRGSDTCE LVFENCFVPD ENILGKEGKG VYVMMSGLDL ERLVLAAGPL GIMQACLDVV LPYVRQREQF
301: GRPIGEFQFI QGKIADMYTS LQSSRSYVYS VARDCDNGKV DPKDCAGAIL CAAERATQVA LQAIQCLGGN GYVNEYPTGR LLRDAKLYEI GAGTSEIRRM
401: IIGRELFKEQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.