Factsheet for Os05t0125500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
mitochondrion: 23027867
mitochondrion: 23356873

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035475_P001	Maize	mitochondrion	86.55	90.77
TraesCS1B01G085100.1	Wheat	mitochondrion	89.73	89.95
HORVU1Hr1G013820.4	Barley	mitochondrion	86.55	89.85
TraesCS1A01G066800.2	Wheat	mitochondrion	89.49	89.71
EES18942	Sorghum	mitochondrion	81.66	89.3
TraesCS1D01G067800.2	Wheat	mitochondrion	89.49	88.41
GSMUA_Achr6P08800_001	Banana	mitochondrion	85.82	85.82
VIT_06s0004g03140.t01	Wine grape	mitochondrion	83.37	84.41
KRH24916	Soybean	mitochondrion	83.13	83.13
AT3G45300.1	Thale cress	mitochondrion	82.89	82.89
Bra038291.1-P	Field mustard	mitochondrion	82.4	82.4
CDY53838	Canola	mitochondrion	82.15	82.15
KRG89023	Soybean	mitochondrion	81.91	81.71
Solyc11g069180.1.1	Tomato	plastid	79.95	79.37
PGSC0003DMT400020955	Potato	mitochondrion	79.71	79.13
PGSC0003DMT400069152	Potato	mitochondrion	77.26	76.7
Solyc06g073560.2.1	Tomato	mitochondrion	77.02	76.46
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	82.15	72.41
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	90.95	66.55
Os06t0346300-00	Rice	peroxisome	16.63	26.67
Os01t0159400-01	Rice	nucleus	26.89	25.4
Os06t0347100-01	Rice	mitochondrion	14.18	23.97
Os05t0163700-01	Rice	cytosol, mitochondrion, peroxisome	25.18	23.95
Os07t0675000-02	Rice	nucleus	21.27	10.47

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:4.2.7.3	EntrezGene:4337676
ProteinID:AAS90672.2	ProteinID:AAT39231.1	EMBL:AK066314	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N
InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	ProteinID:BAF16435.1	ProteinID:BAS92064.1
ProteinID:EEE62179.1	GO:GO:0000166	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006139	GO:GO:0006552
GO:GO:0008150	GO:GO:0008152	GO:GO:0008470	GO:GO:0009056	GO:GO:0009083	GO:GO:0009451
GO:GO:0009982	GO:GO:0009987	GO:GO:0016491	GO:GO:0016627	GO:GO:0016866	GO:GO:0050660
GO:GO:0055114	InterPro:IPR037069	InterPro:IVD	EnsemblPlantsGene:Os05g0125500	EnsemblPlants:Os05t0125500-01	PFAM:PF00441
PFAM:PF02770	PFAM:PF02771	PIRSF:PIRSF016578	ScanProsite:PS00072	ScanProsite:PS00073	PANTHER:PTHR43884
PANTHER:PTHR43884:SF10	UniProt:Q75IM9	SUPFAM:SSF47203	SUPFAM:SSF56645	UniParc:UPI0000378063	RefSeq:XP_015639342.1
SEG:seg	:	:	:	:	:

Description

Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD). (Os05t0125500-01)

Coordinates

chr5:-:1470049..1473944

Molecular Weight (calculated)

44533.7 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.124

Length

409 amino acids

Sequence
(BLAST)

001: MAAAQRWLPG ILRRGDGLAR RLYSSASSLL FDDTQEQFKE SVHKFAQETI APHAAAIDAS NHFPKDVNLW KLMGDFNLHG LTAPEEYGGM GLGYMYHCIA
101: MEEISRASGS VGLSYGAHSN LCINQLVRHG SPAQKLKYLP KLISGEHVGA LAMSEPNSGS DVVSMKCKAE KVDGGYVING NKMWCTNGPS AQTLVVYAKT
201: DIAAGSKGIT AFIIEKGMPG FSTAQKLDKL GMRGSDTCEL VFENCFVPHE NVLGEEGKGV YVMMSGLDLE RLVLAAGPIG LMQACLDVAV PYVRQREQFG
301: RPIGEFQFIQ GKLADMYTSL QSSRSFVYSV ARDCDNGKVD RKDCAGVILF AAERATQVAL QAIQCLGGNG YINEYPTGRL LRDAKLFEIG AGTSEIRRMI
401: IGRELFKEE

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.