Factsheet for PGSC0003DMT400020955

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069180.1.1	Tomato	plastid	94.17	94.17
VIT_06s0004g03140.t01	Wine grape	mitochondrion	84.47	86.14
KRH24916	Soybean	mitochondrion	84.47	85.09
GSMUA_Achr6P08800_001	Banana	mitochondrion	83.01	83.62
KRG89023	Soybean	mitochondrion	81.07	81.46
AT3G45300.1	Thale cress	mitochondrion	80.83	81.42
CDY53838	Canola	mitochondrion	80.83	81.42
Bra038291.1-P	Field mustard	mitochondrion	80.34	80.93
PGSC0003DMT400069152	Potato	mitochondrion	80.83	80.83
Zm00001d035475_P001	Maize	mitochondrion	75.97	80.26
HORVU1Hr1G013820.4	Barley	mitochondrion	76.7	80.2
Os05t0125500-01	Rice	mitochondrion	79.13	79.71
TraesCS1A01G066800.2	Wheat	mitochondrion	78.16	78.92
TraesCS1B01G085100.1	Wheat	mitochondrion	78.16	78.92
TraesCS1D01G067800.2	Wheat	mitochondrion	78.64	78.26
EES18942	Sorghum	mitochondrion	70.15	77.27
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	79.85	70.91
Zm00001d010970_P003	Maize	cytosol, peroxisome, plasma membrane	78.16	57.6
PGSC0003DMT400049359	Potato	peroxisome	24.27	22.78
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	22.82	21.41
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	2.91	20.69
PGSC0003DMT400060245	Potato	cytosol	18.69	9.29

Protein Annotations

KEGG:00280+1.3.8.4	Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:102601763	Gene3D:2.40.110.10	MapMan:4.2.7.3
EMBL:AJ278988	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	ProteinID:CAC08234	ProteinID:CAC08234.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006552	GO:GO:0008150	GO:GO:0008152	GO:GO:0008470
GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114
GO:GO:1902196	GO:GO:1902198	InterPro:IPR037069	InterPro:IVD	PFAM:PF00441	PFAM:PF02770
PFAM:PF02771	EnsemblPlantsGene:PGSC0003DMG400008113	PGSC:PGSC0003DMG400008113	EnsemblPlants:PGSC0003DMT400020955	PIRSF:PIRSF016578	ScanProsite:PS00072
ScanProsite:PS00073	PANTHER:PTHR43884	PANTHER:PTHR43884:SF10	UniProt:Q9FS87	SUPFAM:SSF47203	SUPFAM:SSF56645
UniParc:UPI0002961007	RefSeq:XP_006340144.1	SEG:seg	:	:	:

Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FS87]

Coordinates

chr11:+:41104262..41111799

Molecular Weight (calculated)

45266.5 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.144

Length

412 amino acids

Sequence
(BLAST)

001: MHKLFVARSV KSALFRIKNH QKPQFAAFST SLLFDDTQKQ FKESVAQFAQ ENIAPHAEKI DRTNYFPQDV NLWKLMGNFN LLGITVPEEY GGLGLGYLYH
101: CIAMEEISRA SGSVGLSYGA HTNLCINQLV RNGTHEQKQK YLPKLISGEH VGALAMSEPN AGSDVVSMKC KADRVEGGYV LNGNKMWCTN GPTAQTLVVY
201: AKTDVTAGSK GITAFIIEKG MTGFSTAQKL DKLGMRGSDT CELVFENCFV PEENVLGQVG RGVYVLMSGL DLERLVLASG PVGIMQACLD VVLPYVKQRE
301: QFGRPIGEFQ FVQGKVADMY TSMQSSRSYL YSVARECDSG TINTKDCAGV ILSAAERATQ VALQAIQCLG GNGYVNEYPT GRFLRDAKLY EIGAGTSEIR
401: RMIIGRELFK EQ

Best Arabidopsis Sequence Match ( AT3G45300.1 )
(BLAST)

001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE

Arabidopsis Description

IVDIsovaleryl-CoA dehydrogenase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SWG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.