Factsheet for PGSC0003DMT400060245

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome, plastid
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054370.2.1	Tomato	nucleus	98.07	98.07
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	6.15	87.93
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	75.15	75.98
KRH12085	Soybean	nucleus	71.77	71.86
Bra029606.1-P	Field mustard	cytosol	70.93	71.71
CDY05294	Canola	cytosol	70.81	71.67
CDY24664	Canola	peroxisome	70.81	71.59
AT3G06810.1	Thale cress	peroxisome	70.93	71.36
KRH37066	Soybean	endoplasmic reticulum, nucleus	65.26	71.18
HORVU2Hr1G018720.2	Barley	peroxisome	66.59	69.17
GSMUA_Achr8P30030_001	Banana	cytosol	71.17	69.17
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	69.6	69.02
TraesCS2A01G109700.1	Wheat	golgi	69.12	68.79
TraesCS2B01G127700.1	Wheat	peroxisome	69.0	68.67
TraesCS2D01G109900.1	Wheat	golgi, unclear	68.88	68.55
Os07t0675000-02	Rice	nucleus	68.52	68.35
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	69.48	65.68
CDY34928	Canola	extracellular	8.2	53.12
PGSC0003DMT400069152	Potato	mitochondrion	10.01	20.15
PGSC0003DMT400020955	Potato	mitochondrion	9.29	18.69
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	7.36	13.9
PGSC0003DMT400049359	Potato	peroxisome	7.24	13.67

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:102587144	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10
MapMan:5.7.3.3.2	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049
GO:GO:0016627	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0050660	GO:GO:0055114
InterPro:IPR037069	InterPro:Kinase-like_dom_sf	UniProt:M1C5H0	PFAM:PF00441	PFAM:PF01636	PFAM:PF02770
PFAM:PF02771	EnsemblPlantsGene:PGSC0003DMG400023436	PGSC:PGSC0003DMG400023436	EnsemblPlants:PGSC0003DMT400060245	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282
SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI000296FABF	RefSeq:XP_006345978.1	:

Description

IBR3 (IBA-RESPONSE 3) [Source:PGSC_GENE;Acc:PGSC0003DMG400023436]

Coordinates

chr5:-:50077953..50086958

Molecular Weight (calculated)

92302.9 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.244

Length

829 amino acids

Sequence
(BLAST)

001: MANRTSDLAG RVDPAQSFDI EALLRYASAN VHGFPSNISN FTLSQFGHGQ SNPTFLIEAR SGTFAKKYVL RKKPHGKLLA SAHAVEREYE VLHALGTHTQ
101: VPVPKVFCLC TDSSVIGTPF YIMEYLEGRI FIDPNLPDVS PKRRRDICRA VSQALASVHS ANVDAIGLGN YGKRKDYCKR QVERWAKQYL LSTGEGKSRR
201: NPKMLELVDW LRQHIPLEDS LGETAGLVHG DFRIDNVVFH PTEDRVIGIL DWELSTLGNQ MSDVAYSCLS YFVNISLEDL DGSDGFERSS FPEGIPSLPE
301: YLADYCSAAG RPWPVDQWKF YIAFSLFRGA SIFAGIHSRW IMGNASGGER ARFAGEKADS FIKTAWLFIQ RKSVLPLHPP SETTREDNIG IFGSESQIQV
401: TPTSGKFVPS EKVQDLRDKL IKFMEDHIYP KESDFYKLAQ STMRWTIHPD EEKLKDLAKR EGLWNLWIPF DSAARAREVI FGSGNDSLVE NKFNRLLGAG
501: LSNLEYGYLC EIMGRSICAP QIFNCGAPDT GNMEVLLRYG NEEQIKEWLV PLLEGKTRSG FAMTEPQVAS SDATNIECSI KRHGDSYIIN GKKWWTSGAM
601: DPRCKLLIVM GKTDLTAPKH KQQSMILVDI NTPGIMIKRP LTVFGFDDAP HGHAEIFFEN VSVPANNILL GEGRGFEIAQ GRLGPGRLHH CMRLIGAAER
701: GMQMMVQRAL ERRAFGKLIA EHGAFLSDVA KCRIELEKTR LLVLEAADQL DRLGNKKARA TIAMAKVAAP NMALMVLDTA MQVHGAAGVS GDTVLAHLWA
801: TARTLRIADG PDEVHLGTIA KTELRKSRL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.