Factsheet for TraesCS2A01G109700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G109900.1	Wheat	golgi, unclear	98.08	98.08
TraesCS2B01G127700.1	Wheat	peroxisome	97.72	97.72
HORVU2Hr1G018720.2	Barley	peroxisome	92.2	96.24
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	86.67	86.36
Os07t0675000-02	Rice	nucleus	85.35	85.56
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	5.88	84.48
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	86.07	81.76
GSMUA_Achr8P30030_001	Banana	cytosol	73.35	71.63
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	69.51	70.61
Bra029606.1-P	Field mustard	cytosol	69.15	70.24
CDY05294	Canola	cytosol	68.91	70.09
CDY24664	Canola	peroxisome	68.91	70.0
Solyc05g054370.2.1	Tomato	nucleus	69.15	69.48
AT3G06810.1	Thale cress	peroxisome	68.55	69.3
PGSC0003DMT400060245	Potato	cytosol	68.79	69.12
KRH12085	Soybean	nucleus	68.31	68.72
Solyc01g066310.2.1	Tomato	nucleus	67.83	68.24
KRH37066	Soybean	endoplasmic reticulum, nucleus	61.58	67.5
CDY34928	Canola	extracellular	8.76	57.03
TraesCS1A01G066800.2	Wheat	mitochondrion	9.96	20.34
TraesCS1A01G110300.1	Wheat	peroxisome	6.72	12.81

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
InterPro:Aminoglycoside_PTrfase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049	GO:GO:0016627
GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069
InterPro:Kinase-like_dom_sf	PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909
PANTHER:PTHR10909:SF221	SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	EnsemblPlantsGene:TraesCS2A01G109700	EnsemblPlants:TraesCS2A01G109700.1
TIGR:cd05154	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:61468779..61479857

Molecular Weight (calculated)

92214.1 Da

IEP (calculated)

8.404

GRAVY (calculated)

-0.234

Length

833 amino acids

Sequence
(BLAST)

001: MATMTSELLR PVHAAQALDE AALLRYAAAH VPGFPGPAPS LALTQFGHGQ SNPTYCIQAS APGGEARRYV LRKKPAGAIL QSAHAVEREF QVLKALGAYT
101: DVPVPKVFCL CTDASVIGTP FYIMEYLEGA LYLNNKLTGI TPDKRRNIYL AAAKTLAAIH KIDATAVGLQ KYGKRDNYCK RQVDRWGKQY LHSTGEGKPA
201: RYQKMLDLID WLKENIPEED SSTGLGTGLV HGDYRVDNLV FHPTEDRVIG VLDWELSTLG NQMCDVAYSC MPYIIDATLS ENSSYGGFEH SGIPDGIPQL
301: EEYLAVYCSM SARPWPAANW KFYIAFSLFR GASIYAGVYH RWTMGNASGG ERARFAGKAA NVMVDCAWHY INRENVLRAH PATGMHVLKA PRQGFHVEQE
401: DSTLTNGQGK FVPSEKVMQL RQKIIKFMKD HIYPKEDELY KHAQSTSRWT IHPEEENLKA LAKEEGLWNL FIPLDSAARA RKLLLEDQSH VSAGSSNDLL
501: LGAGLTNLEY GYLCEIMGRS VWAPQIFNCG APDTGNMEVL LRYGTKEQQK QWLVPLLEGK IRSGFAMTEP QVASSDATNI ECAISRQGDF YVINGRKWWT
601: SGAMDPRCKI LILMGKTDFS APRHKQQSMI LVDINTPGVQ IKRPLLVFGF DDAPHGHAEI TFDNVRVPVT NILLGEGRGF EIAQGRLGPG RLHHCMRLIG
701: AAERGMNMMV ERALSRTAFG KKIAQHGSFQ SDLAKCRIEL EQTRLLVLEA ADQLDRHGNK KARGILAMAK VAAPNMALKV LDMAIQVHGA AGVSSDTVLS
801: HLWATARTLR LADGPDEVHL GTIAKLELQR ARM

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.