Factsheet for VIT_05s0077g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

cytosol 2
peroxisome 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	6.46	91.38
Solyc05g054370.2.1	Tomato	nucleus	76.22	75.39
CDY24664	Canola	peroxisome	75.37	75.37
Bra029606.1-P	Field mustard	cytosol	75.24	75.24
PGSC0003DMT400060245	Potato	cytosol	75.98	75.15
AT3G06810.1	Thale cress	peroxisome	75.49	75.12
CDY05294	Canola	cytosol	75.0	75.09
KRH12085	Soybean	nucleus	74.88	74.15
Solyc01g066310.2.1	Tomato	nucleus	74.88	74.15
KRH37066	Soybean	endoplasmic reticulum, nucleus	68.41	73.82
GSMUA_Achr8P30030_001	Banana	cytosol	74.39	71.51
HORVU2Hr1G018720.2	Barley	peroxisome	68.05	69.92
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	71.22	69.86
TraesCS2A01G109700.1	Wheat	golgi	70.61	69.51
Os07t0675000-02	Rice	nucleus	70.37	69.43
TraesCS2B01G127700.1	Wheat	peroxisome	70.12	69.03
TraesCS2D01G109900.1	Wheat	golgi, unclear	70.12	69.03
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	71.59	66.93
CDY34928	Canola	extracellular	9.02	57.81
VIT_06s0004g03140.t01	Wine grape	mitochondrion	9.76	19.8
VIT_08s0105g00460.t01	Wine grape	peroxisome	6.83	12.56

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:100258517	wikigene:100258517	Gene3D:2.40.110.10	Gene3D:3.30.200.20
Gene3D:3.90.1200.10	MapMan:5.7.3.3.2	EntrezGene:ACAD10	wikigene:ACAD10	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N
InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	ProteinID:CBI22966
ProteinID:CBI22966.3	UniProt:D7SYA9	EMBL:FN595246	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003995	GO:GO:0005488	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016627	GO:GO:0033539	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069
InterPro:Kinase-like_dom_sf	PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909
PANTHER:PTHR10909:SF282	SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI0001BE1EBA	ArrayExpress:VIT_05s0077g01940
EnsemblPlantsGene:VIT_05s0077g01940	EnsemblPlants:VIT_05s0077g01940.t01	RefSeq:XP_002271622	RefSeq:XP_002271622.1	RefSeq:XP_003631946	RefSeq:XP_003631946.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:1516645..1526202

Molecular Weight (calculated)

91053.0 Da

IEP (calculated)

8.463

GRAVY (calculated)

-0.197

Length

820 amino acids

Sequence
(BLAST)

001: MASRTSDLLG RVHPAHAFDF EALFRYSCAN VDGFPVSSSS FTISQFGHGQ SNPTFLMEVG EGGSLKRYVV RKKPPGKLLQ SAHAVEREFQ VLRALGLHTQ
101: VPVPKVFCLC IDTSVIGTAF YIMEYLEGRI FLDPKLPGIT PNRRAAIYRA IAKALAALHS ADVDSIGLEK YGHRDSYCKR QIERWAKQYI ASTGEGRPVG
201: NPKMFELIDW LRQHIPLEDS RAVTTGLVHG DFRIDNLVFH PIEDRVVGIL DWELSTLGNQ MCDVANICLP YIKDLRPDRL DEGFEVTGIP EGIPSQSEYL
301: AEYCSAAGKP WPGTAWKFYI AFNMFRGASI LAGVYSRWIM GNASGGERAK HTGRVANSLI DTAWAVIEQK SLLPEHPPSG PKAQDWGETE DQSLSNSRGK
401: FVPRKKVLEL RSRLIKFMED HIYPMENEFS KLANSTLRWT VHPEEEKLKE LAKKEGLWNL WVPADSAARA RNLISVGRIL SDDASNLLGA GLSNLEYGYL
501: CEIMGRSVWA PQVFNCGAPD TGNMEVLLRY GNKEQLHEWL IPLLEGKIRS GFSMTEPQVA SSDATNIECS IRRQGDSYII NGKKWWTSGA MDPRCKLLIV
601: MGKTDFTAPI HKQQSMILVD IQTPGIHIKR PLTVFGFDDA PHGHAEISFE NVRVPATNIL LGEGRGFEIA QGRLGPGRLH HCMRLIGAAE RGMQLMVQRA
701: LKRRVFGKLI AEQGSFLSDV AKCRVELEQT KLLVLEAADQ LDRLGNKKAR GTIAMAKVAA PNMALKVLDM AMQVHGAAGL SSDTVLAHLW ATARTLRIAD
801: GPDEVHLGTI AKLELQRAKL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.