CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37066	Soybean	endoplasmic reticulum, nucleus	85.51	93.16
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	5.92	84.48
CDY05294	Canola	cytosol	74.4	75.21
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	74.15	74.88
AT3G06810.1	Thale cress	peroxisome	74.4	74.76
Bra029606.1-P	Field mustard	cytosol	73.91	74.63
CDY24664	Canola	peroxisome	73.91	74.63
Solyc05g054370.2.1	Tomato	nucleus	71.98	71.89
Solyc01g066310.2.1	Tomato	nucleus	71.86	71.86
PGSC0003DMT400060245	Potato	cytosol	71.86	71.77
HORVU2Hr1G018720.2	Barley	peroxisome	67.27	69.8
GSMUA_Achr8P30030_001	Banana	cytosol	70.77	68.7
TraesCS2D01G109900.1	Wheat	golgi, unclear	68.72	68.31
TraesCS2B01G127700.1	Wheat	peroxisome	68.72	68.31
TraesCS2A01G109700.1	Wheat	golgi	68.72	68.31
Os07t0675000-02	Rice	nucleus	68.24	67.99
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	68.36	67.7
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	68.6	64.77
CDY34928	Canola	extracellular	8.82	57.03
KRG89023	Soybean	mitochondrion	9.78	19.76
KRH24916	Soybean	mitochondrion	9.54	19.32
KRH49397	Soybean	endoplasmic reticulum	6.16	12.66
KRH75651	Soybean	extracellular	2.17	12.59
KRH65710	Soybean	peroxisome	6.64	12.59
KRH00268	Soybean	peroxisome	6.52	12.44

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	EntrezGene:100788184	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10
MapMan:5.7.3.3.2	UniProt:A0A0R0GAV8	EMBL:ACUP02009265	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf
InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	EnsemblPlantsGene:GLYMA_15G150900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539	GO:GO:0050660
GO:GO:0055114	InterPro:IPR037069	EnsemblPlants:KRH12085	ProteinID:KRH12085	ProteinID:KRH12085.1	InterPro:Kinase-like_dom_sf
PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282
SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI0006EDD710	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:12477309..12487462

Molecular Weight (calculated)

92057.8 Da

IEP (calculated)

8.506

GRAVY (calculated)

-0.230

Length

828 amino acids

Sequence
(BLAST)

001: MARNTADLVT QLNVAHHFPH DSLLRYCSSH VSGFPHPPTH FTVSQFGHGQ SNPTYLLKVG SHGSLVKHYV LRKKPPGTLL ASAHAVDREF QVLQALGAHT
101: KVPVPKVFCL CNDPTVIGTA FYIMEYLEGR IFIDPKLPGV APENRRAIYR ATAKALASLH SANVDSIGLG NYGRRNDYCK RQIERWAKQY VASTREGKPA
201: SYPKMFALID WLRHQIPLED TSGATGGLVH GDFRIDNLVF HPTEDRVIGI LDWELSTLGN QMCDVAYSCM TYVADIGHEK VREGMERSGL SEGIPSLPEY
301: LADYCSLAGR KWPVAEWKFY VAFSFFRAAS IHAGVYNRWV KGNASGGERA RHTEVLANGL IDTAWKFIEH KSVLPQHPPS DANAQDYSKE LVNGNDIQGL
401: SNQGKFVPSQ KVLALRNKLI KFMEEHIYPM ENEFYKLTQS DSRWTVYPAE EKLKEMAKKE GLWNLWIPID SAVRARNLLF DGSNNYRSSD ANDLLLGAGL
501: TNLEYGYLCE IMGHSLWAPQ VFNCGAPDTG NMEVLLRYGN KEQLQEWLIP LLDGTIRSGF AMTEPHVASS DATNIECSIK RQGDSYIING TKWWTSGAMD
601: PRCRILIVMG KTDFNAVKHK QQSMILVDVQ TPGVHIKRPL TVFGFDDAPH GHAEVTFENV CVPAKNIILG EGRGFEIAQG RLGPGRLHHC MRLIGVAERG
701: MHMMIQRAVG RRTFGKLIAQ HGSFISDMAK CRIELESTRL LVLEAADQLD RHGNKKARGI LAMAKVAAPN MALKVLDMAI QVHGAAGVSS DTVLAHLWAA
801: ARTLRIADGP DEVHLGTIAK LELQKAKL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.