CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24664	Canola	peroxisome	98.05	97.93
AT3G06810.1	Thale cress	peroxisome	93.41	92.84
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	6.11	86.21
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	75.09	75.0
KRH12085	Soybean	nucleus	75.21	74.4
KRH37066	Soybean	endoplasmic reticulum, nucleus	68.38	73.68
Solyc01g066310.2.1	Tomato	nucleus	71.79	71.01
PGSC0003DMT400060245	Potato	cytosol	71.67	70.81
Solyc05g054370.2.1	Tomato	nucleus	71.43	70.57
HORVU2Hr1G018720.2	Barley	peroxisome	67.77	69.55
TraesCS2A01G109700.1	Wheat	golgi	70.09	68.91
TraesCS2B01G127700.1	Wheat	peroxisome	69.96	68.79
TraesCS2D01G109900.1	Wheat	golgi, unclear	69.84	68.67
Os07t0675000-02	Rice	nucleus	69.6	68.59
GSMUA_Achr8P30030_001	Banana	cytosol	71.18	68.35
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	69.11	67.7
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	68.62	64.08
CDY34928	Canola	extracellular	9.77	62.5
CDY53838	Canola	mitochondrion	9.4	18.83
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	9.77	17.24
CDX78043	Canola	peroxisome	7.2	13.44
CDY23164	Canola	peroxisome	7.08	13.21
CDX95301	Canola	peroxisome	7.08	13.21
CDX73688	Canola	peroxisome	7.08	13.21
CDY64742	Canola	cytosol, mitochondrion, plastid	2.32	10.98
CDY59726	Canola	cytosol	1.1	10.47
CDY59727	Canola	extracellular, peroxisome, plastid	1.47	9.38
CDX73320	Canola	plastid	2.56	8.75

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
GO:A0A078EXH4	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C
InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	EnsemblPlants:CDY05294	ProteinID:CDY05294	ProteinID:CDY05294.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016627
GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00120124001	InterPro:IPR037069	InterPro:Kinase-like_dom_sf	PFAM:PF00441
PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282	SUPFAM:SSF47203
SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI0004EF058D	SEG:seg	:	:

Description

BnaC05g45090D

Coordinates

chrLK031960:+:917223..921802

Molecular Weight (calculated)

91001.8 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.204

Length

819 amino acids

Sequence
(BLAST)

001: MGSNTGDLVT RVQSAHLFDH DALLRYAADN VSGFPTNPSQ FTISQFGHGQ SNPTFLIAVG SGSSLKRYVL RKKPPGKLLQ SAHAVEREFQ VLKALGEHTQ
101: VPVPKVFCLC TDPTVIGTAF YIMEFMEGRI FIDPKLHNVA PERRTAIYRA AAKALASLHS ADVDAIGLGK YGRRANYCQR QIDRWFKQYL ASTSEGKPVR
201: NPKMFELVDW LRKSIPAEDS TGATSGLVHG DFRIDNLVFH PYEDRVIGIL DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGLETTG LPDGILSMPE
301: FLLEYCSALG KPWPAANWKF YVAFSMFRAA SIYTGVYNRW LMGNASAGER ARNTGVQANE LVECALGYIA RENVLPAHPP SGKRDESPSY ESLVDGTGRF
401: VPNRKVLELR GKLIKFMETH IYPMEKEFAK LAQSDLRWTV HPEEERLKEE AKRQGLWNLF IPVDSAARAR RELAAIENKQ SFDQLFGEGL TNLEYGYLCE
501: IMGRSVWAPQ VFNCGAPDTG NMEVILRYGN KEQIAEWLIP LLEGKIRSGF AMTEPQVASS DATNIECSIK RQGDSYIING TKWWTSGAMD PRCRVLILMG
601: KTDFNAPKHK QQSMILVDMR TPGIHVKRPL TVFGFDDAPH GHAEISFENV IVPAKNILLG EGRGFEIAQG RLGPGRLHHC MRLIGAAERG MELMAKRALS
701: RKTFGMFIAQ HGSFVSDLAK LRVELEGTRL LVLEAADHLD KFGNKKARGI LAMAKVAAPN MALKVLDTAI QVHGAAGVCS DTVLAHLWAT ARTLRIADGP
801: DEVHLGTIGK LELQRASKL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.