CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010066.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.07	57.4
CDY59727	Canola	extracellular, peroxisome, plastid	35.26	47.66
CDX73320	Canola	plastid	44.51	32.08
CDX78043	Canola	peroxisome	46.82	18.45
CDX73688	Canola	peroxisome	46.82	18.45
CDX95301	Canola	peroxisome	45.09	17.77
CDY23164	Canola	peroxisome	44.51	17.54
Os01t0159400-01	Rice	nucleus	35.84	14.32
Zm00001d037521_P002	Maize	peroxisome	36.42	14.32
Os05t0163700-01	Rice	cytosol, mitochondrion, peroxisome	35.26	14.19
EES17775	Sorghum	cytosol, mitochondrion, peroxisome	35.26	14.09
TraesCS1D01G111900.1	Wheat	golgi, nucleus, plastid, unclear	35.26	13.96
TraesCS1B01G129300.1	Wheat	peroxisome	35.26	13.96
GSMUA_Achr8P21130_001	Banana	peroxisome	34.1	13.53
TraesCS1A01G110300.1	Wheat	peroxisome	34.1	13.5
OQU77505	Sorghum	peroxisome	34.1	13.5
OQU86270	Sorghum	peroxisome	33.53	13.27
HORVU1Hr1G024240.1	Barley	mitochondrion, peroxisome, plastid	34.1	12.47
Zm00001d039768_P003	Maize	mitochondrion	32.37	12.42
CDY53838	Canola	mitochondrion	12.72	5.38
CDX86013	Canola	endoplasmic reticulum, mitochondrion, nucleus	13.29	4.96
CDY59726	Canola	cytosol	2.31	4.65
CDY34928	Canola	extracellular	1.73	2.34
CDY05294	Canola	cytosol	10.98	2.32
CDY24664	Canola	peroxisome	10.98	2.32

Protein Annotations

Gene3D:1.10.540.10	MapMan:35.1	GO:A0A078JH56	UniProt:A0A078JH56	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf
InterPro:AcylCoA_DH/oxidase_NM_dom	EnsemblPlants:CDY64742	ProteinID:CDY64742	ProteinID:CDY64742.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00042658001	InterPro:IPR037069
PFAM:PF02771	PANTHER:PTHR43188	PANTHER:PTHR43188:SF1	SUPFAM:SSF56645	TMHMM:TMhelix	UniParc:UPI0004EEE527
SEG:seg	:	:	:	:	:

Description

BnaC09g53220DBnaC09g53220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH56]

Coordinates

chrLK034539:-:1824..3707

Molecular Weight (calculated)

19864.7 Da

IEP (calculated)

8.469

GRAVY (calculated)

0.091

Length

173 amino acids

Sequence
(BLAST)

001: MTVLSSTDRN NAEKKVKISK FPTCTSDYYH FIELLTPEEQ AVRKRVREFM EKEVAPIMTE YWEKAEFPFH IIPKLGALGV VGGSIKGYGC PGLLASPSQP
101: MPLQQQRYLE LMQAVGLLIW CIPLWTCSLL QVWDTKVYRK LWSSLALEKL LELKLQMGGA CPWILFLHMF IVP

Best Arabidopsis Sequence Match ( AT3G51840.1 )
(BLAST)

001: MAVLSSADRA SNEKKVKSSY FDLPPMEMSV AFPQATPAST FPPCTSDYYH FNDLLTPEEQ AIRKKVRECM EKEVAPIMTE YWEKAEFPFH ITPKLGAMGV
101: AGGSIKGYGC PGLSITANAI ATAEIARVDA SCSTFILVHS SLGMLTIALC GSEAQKEKYL PSLAQLNTVA CWALTEPDNG SDASGLGTTA TKVEGGWKIN
201: GQKRWIGNST FADLLIIFAR NTTTNQINGF IVKKDAPGLK ATKIPNKIGL RMVQNGDILL QNVFVPDEDR LPGVNSFQDT SKVLAVSRVM VAWQPIGISM
301: GIYDMCHRYL KERKQFGAPL AAFQLNQQKL VQMLGNVQAM FLMGWRLCKL YETGQMTPGQ ASLGKAWISS KARETASLGR ELLGGNGILA DFLVAKAFCD
401: LEPIYTYEGT YDINTLVTGR EVTGIASFKP ATRSRL

Arabidopsis Description

ACX4Acyl-coenzyme A oxidase 4, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q96329]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.