Factsheet for TraesCS1D01G111900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, nucleus

Predictor Summary:

peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plastid, unclear
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G129300.1	Wheat	peroxisome	100.0	100.0
TraesCS1A01G110300.1	Wheat	peroxisome	95.88	95.88
EES17775	Sorghum	cytosol, mitochondrion, peroxisome	90.85	91.69
Os05t0163700-01	Rice	cytosol, mitochondrion, peroxisome	89.47	90.93
Zm00001d037521_P002	Maize	peroxisome	90.16	89.55
HORVU1Hr1G024240.1	Barley	mitochondrion, peroxisome, plastid	96.34	89.01
OQU77505	Sorghum	peroxisome	85.35	85.35
GSMUA_Achr8P21130_001	Banana	peroxisome	78.72	78.9
Solyc10g085200.1.1	Tomato	peroxisome	73.46	76.98
VIT_08s0105g00460.t01	Wine grape	peroxisome	78.26	76.68
KRH49397	Soybean	endoplasmic reticulum	69.79	75.68
AT3G51840.1	Thale cress	peroxisome	75.06	75.23
KRH65710	Soybean	peroxisome	74.6	74.6
PGSC0003DMT400049359	Potato	peroxisome	74.6	74.26
KRH00268	Soybean	peroxisome	73.68	74.19
Solyc10g076600.1.1	Tomato	peroxisome	74.14	73.8
CDX73688	Canola	peroxisome	73.68	73.35
Bra006879.1-P	Field mustard	peroxisome	73.46	73.12
CDX78043	Canola	peroxisome	73.46	73.12
PGSC0003DMT400028641	Potato	cytosol, mitochondrion, peroxisome	73.23	72.89
CDX95301	Canola	peroxisome	73.0	72.67
CDY23164	Canola	peroxisome	72.77	72.44
KRH75651	Soybean	extracellular	12.13	37.06
CDY64742	Canola	cytosol, mitochondrion, plastid	13.96	35.26
CDY59727	Canola	extracellular, peroxisome, plastid	9.84	33.59
Bra010066.1-P	Field mustard	cytosol, peroxisome, plasma membrane	11.44	29.59
CDX73320	Canola	plastid	13.5	24.58
TraesCS1D01G067800.2	Wheat	mitochondrion	22.88	24.15
CDY59726	Canola	cytosol	1.83	9.3
TraesCS2D01G109900.1	Wheat	golgi, unclear	13.04	6.84

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	MapMan:5.7.3.2.1	InterPro:Acyl-CoA_DH_CS	InterPro:Acyl-CoA_Oxase/DH_cen-dom
InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016627	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069	PFAM:PF00441	PFAM:PF02770
PFAM:PF02771	ScanProsite:PS00073	PANTHER:PTHR43188	PANTHER:PTHR43188:SF1	SUPFAM:SSF47203	SUPFAM:SSF56645
EnsemblPlantsGene:TraesCS1D01G111900	EnsemblPlants:TraesCS1D01G111900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:107216723..107220303

Molecular Weight (calculated)

47154.2 Da

IEP (calculated)

9.367

GRAVY (calculated)

-0.019

Length

437 amino acids

Sequence
(BLAST)

001: MGSLRGGSGG EGRNEDGGKV GLPALEVALA FPQATPASLF PPAVSDYYQL DDLLTNEEKA LRKKVRAISE KEIAPIMTEY WEKAEFPFHA IPKLATLGLA
101: GSTTKGYGCP GLSLTASAVS IAEVARVDAS CSTFILVHSS LAMSTIALCG SEAQKQKYLP SLAQFKTVGC WALTEPDYGS DASSLKTSAT KVPGGWQLDG
201: QKRWIGNSTF ADVLVILARN ADTKQLNGFI VKKGAPGLRA TKIQNKIGLR MVQNGDILLN KVFVPEEDRL TGINSFQDIS KVLAMSRIMV AWQPIGISMG
301: VYDMCHRYLK ERKQFGAPLA AFQLNQEKLV RMLGNIQAML LVGWRLCKLY ESGKMTPGHA SLGKAWTSSK SREVVSLGRE LLGGNGILAD FLVAKAFCDL
401: EPIYSYEGTY DINSLVTGRE ITGIASFKPA AVAKSRL

Best Arabidopsis Sequence Match ( AT3G51840.1 )
(BLAST)

001: MAVLSSADRA SNEKKVKSSY FDLPPMEMSV AFPQATPAST FPPCTSDYYH FNDLLTPEEQ AIRKKVRECM EKEVAPIMTE YWEKAEFPFH ITPKLGAMGV
101: AGGSIKGYGC PGLSITANAI ATAEIARVDA SCSTFILVHS SLGMLTIALC GSEAQKEKYL PSLAQLNTVA CWALTEPDNG SDASGLGTTA TKVEGGWKIN
201: GQKRWIGNST FADLLIIFAR NTTTNQINGF IVKKDAPGLK ATKIPNKIGL RMVQNGDILL QNVFVPDEDR LPGVNSFQDT SKVLAVSRVM VAWQPIGISM
301: GIYDMCHRYL KERKQFGAPL AAFQLNQQKL VQMLGNVQAM FLMGWRLCKL YETGQMTPGQ ASLGKAWISS KARETASLGR ELLGGNGILA DFLVAKAFCD
401: LEPIYTYEGT YDINTLVTGR EVTGIASFKP ATRSRL

Arabidopsis Description

ACX4Acyl-coenzyme A oxidase 4, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q96329]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.