CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 3
plastid 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	95.45	90.99
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	6.1	87.93
TraesCS2B01G127700.1	Wheat	peroxisome	86.36	86.67
TraesCS2A01G109700.1	Wheat	golgi	86.36	86.67
TraesCS2D01G109900.1	Wheat	golgi, unclear	86.24	86.55
HORVU2Hr1G018720.2	Barley	peroxisome	82.54	86.47
Os07t0675000-02	Rice	nucleus	84.93	85.44
GSMUA_Achr8P30030_001	Banana	cytosol	73.44	71.98
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	69.86	71.22
Solyc05g054370.2.1	Tomato	nucleus	69.14	69.72
PGSC0003DMT400060245	Potato	cytosol	69.02	69.6
Bra029606.1-P	Field mustard	cytosol	68.06	69.39
CDY24664	Canola	peroxisome	67.94	69.27
CDY05294	Canola	cytosol	67.7	69.11
AT3G06810.1	Thale cress	peroxisome	68.06	69.05
Solyc01g066310.2.1	Tomato	nucleus	67.82	68.48
KRH12085	Soybean	nucleus	67.7	68.36
KRH37066	Soybean	endoplasmic reticulum, nucleus	61.12	67.24
CDY34928	Canola	extracellular	8.85	57.81
EES18942	Sorghum	mitochondrion	8.97	20.05
OQU77505	Sorghum	peroxisome	7.42	14.19
OQU86270	Sorghum	peroxisome	7.18	13.73
EES17775	Sorghum	cytosol, mitochondrion, peroxisome	7.06	13.63
OQU81122	Sorghum	plastid	7.54	13.55

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
EntrezGene:8074440	UniProt:A0A1W0W7X0	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	InterPro:Aminoglycoside_PTrfase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987
GO:GO:0016049	GO:GO:0016627	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0050660
GO:GO:0055114	InterPro:IPR037069	InterPro:Kinase-like_dom_sf	EnsemblPlants:OQU90466	ProteinID:OQU90466	ProteinID:OQU90466.1
PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF221
EnsemblPlantsGene:SORBI_3002G415900	SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI0001A835D1	RefSeq:XP_002461202.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:76316326..76322556

Molecular Weight (calculated)

92652.4 Da

IEP (calculated)

8.266

GRAVY (calculated)

-0.248

Length

836 amino acids

Sequence
(BLAST)

001: MAKLTSELLR PVDPAAALDE AALLRYLAAN VPGFPGPAPA LSLTQFGHGQ SNPTYCIHAY ASAPGGGPAR RYVLRKKPPG SILQSAHAVE REYQVLKALG
101: DHTDVPVPKV YCLCTDASVI GTPFYVMEYL EGIIYPDSAL PGVTPSKRRA IYFYTAKTLA AIHKVDVDAI GLQKYGRRDN YCKRQVQRWE RQYLASTGEG
201: KPARYQRMLD LARWLKEHVP KEDSSAGSGT GLVHGDYRPD NLVFHPTEDR VIGVIDWELS TLGNQMCDVA YSCLPYIIDA SISERTSYGG FQDNGIPDGI
301: PQLEEYLSVY CSFSARPWPA ANWKFYIAFS LFRGASIYAG VYHRWTMGNA SGGERAKFAG KVANAMVDCA WDFINRVNVL QEPPSKGFQV SPAPWQEFHR
401: EEESSTSEKN QGKFVPSEKV MQLRKKLIKF IEDHIYPMEG EFYKHAQSTS RWTIHPEEEN LKALAKKEGL WNLFIPLDSA ARARKLLLED HSQISLGSSN
501: DILLGAGLTN LEYGYLCEIM GRSVCAPQIF NCGAPDTGNM EVLLRYGTKE QQKQWLVPLL EGTIRSGFAM TEPQVASSDA TNIECSISRQ GDFYVINGRK
601: WWTSGAMDPR CKILILMGKT DFSAPKHKQQ SMILVDINTP GVQIKRPLLV FGFDDAPHGH AEITFENVRV PVTNILLGEG RGFEIAQGRL GPGRLHHCMR
701: LVGAAERGMD LMVERALSRT AFGKRIAQHG SFLSDLAKCR IELEQARLLV LEAADQLDRH GNKKARGILA MAKVAAPNMA LKVLDMAMQV HGAAGVSSDT
801: VLSHLWATAR TLRIADGPDE VHLGTIAKLE LQRARL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.