Factsheet for Solyc01g066310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
peroxisome 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	7.0	100.0
Solyc05g054370.2.1	Tomato	nucleus	82.13	82.03
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	74.15	74.88
KRH12085	Soybean	nucleus	71.86	71.86
CDY24664	Canola	peroxisome	71.14	71.83
CDY05294	Canola	cytosol	71.01	71.79
AT3G06810.1	Thale cress	peroxisome	71.14	71.48
Bra029606.1-P	Field mustard	cytosol	70.77	71.46
KRH37066	Soybean	endoplasmic reticulum, nucleus	65.34	71.18
HORVU2Hr1G018720.2	Barley	peroxisome	66.55	69.05
Os07t0675000-02	Rice	nucleus	68.6	68.35
GSMUA_Achr8P30030_001	Banana	cytosol	70.29	68.23
TraesCS2B01G127700.1	Wheat	peroxisome	68.48	68.07
TraesCS2A01G109700.1	Wheat	golgi	68.24	67.83
TraesCS2D01G109900.1	Wheat	golgi, unclear	68.24	67.83
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	68.48	67.82
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	68.96	65.11
CDY34928	Canola	extracellular	8.57	55.47
Solyc06g073560.2.1	Tomato	mitochondrion	10.02	20.15
Solyc11g069180.1.1	Tomato	plastid	9.06	18.2
Solyc10g085200.1.1	Tomato	peroxisome	7.0	13.91
Solyc10g076600.1.1	Tomato	peroxisome	7.13	13.44

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
InterPro:Aminoglycoside_PTrfase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995	GO:GO:0005488
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627
GO:GO:0033539	GO:GO:0050660	GO:GO:0055114	InterPro:IPR037069	UniProt:K4AWN4	InterPro:Kinase-like_dom_sf
PFAM:PF00441	PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF282
SUPFAM:SSF47203	SUPFAM:SSF56112	SUPFAM:SSF56645	EnsemblPlantsGene:Solyc01g066310.2	EnsemblPlants:Solyc01g066310.2.1	UniParc:UPI000276295B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:73959978..73968505

Molecular Weight (calculated)

91698.6 Da

IEP (calculated)

8.339

GRAVY (calculated)

-0.184

Length

828 amino acids

Sequence
(BLAST)

001: MGSRTCDLVG QVNPAQSFDT QALLRYASAN VIGFPANPSL FTISQFGHGQ SNPTFLIEVG SGTLPKKYVL RKKPCGNLLT SAHAVEREYE VLHALSTHSV
101: VPVPKVFSLC TDSSVIGTPF YIMEYLEGRI FVDPTLPDVL PERRRVIFRA VAQALAGLHS ADVDLVGLGN YGKRMNYCKR QVERWAKQYL LSTGEGKSRR
201: NPKMLELADW LRQHIPLEDS SGATAGLVHG DFRIDNVVFH PIEDRVIGIL DWELSTLGNQ MCDVAYSCLG FIVNIASESI EENNGFELTS FPDGVPSLSN
301: YLADYCSAAG RPWPIEQWKF YVAFSLFRGA SIYAGVHCRW IMGNASGGDR ARCAGEKADA FVRTAWSFIQ RKSVLPQHPP TETSLEDHVR QLGHDSSNQG
401: LPMGGKFVPS EKVQKLRNRL TKFMEDHIYP TENEFYKLAE SSMRWTAHPN EEKLKELAKK EGLWNLFIPF DSATRARELI FGSRNGLLNN DFGSLLGAGL
501: SNLEYGYLCE IMGRSVWAPQ IFNCGAPDTG NMEVLLRYGN EVQMKEWLVP LLEGNIRSGF AMTEPQVASS DATNIECSIK RHGNSYIING TKWWTSGAMD
601: PRCKILIVMG KTDLAAPKHK QQSMILVDIN SPGITIKRPL TVFGFDDAPH GHAEIIFENV CVPAKNILLG EGRGFEIAQG RLGPGRLHHC MRLIGAADRG
701: MQMMVQRALQ RRAFGKLIAQ HGSFLSDVAR CRIDLEKTRL LVLEAADQLD RLGNKRARGK IAMAKVASPN MALKVLDTAM QVHGGAGLSG DTVLAHLWAT
801: ARTLRIADGP DEVHLGTIAK MELQRARL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.