Factsheet for GSMUA_Achr8P30030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071541	Potato	cytosol, peroxisome, plastid	5.98	87.93
VIT_05s0077g01940.t01	Wine grape	cytosol, mitochondrion, peroxisome	71.51	74.39
Os07t0675000-02	Rice	nucleus	72.33	74.25
HORVU2Hr1G018720.2	Barley	peroxisome	69.4	74.19
TraesCS2D01G109900.1	Wheat	golgi, unclear	71.98	73.71
TraesCS2B01G127700.1	Wheat	peroxisome	71.75	73.47
OQU90466	Sorghum	cytosol, peroxisome, plasma membrane	71.98	73.44
TraesCS2A01G109700.1	Wheat	golgi	71.63	73.35
CDY05294	Canola	cytosol	68.35	71.18
PGSC0003DMT400060245	Potato	cytosol	69.17	71.17
AT3G06810.1	Thale cress	peroxisome	68.7	71.12
Bra029606.1-P	Field mustard	cytosol	68.35	71.1
CDY24664	Canola	peroxisome	68.35	71.1
Solyc05g054370.2.1	Tomato	nucleus	68.93	70.93
KRH12085	Soybean	nucleus	68.7	70.77
Solyc01g066310.2.1	Tomato	nucleus	68.23	70.29
KRH37066	Soybean	endoplasmic reticulum, nucleus	62.6	70.26
Zm00001d007158_P014	Maize	peroxisome, plasma membrane	71.51	69.56
CDY34928	Canola	extracellular	8.21	54.69
GSMUA_Achr6P08800_001	Banana	mitochondrion	9.14	19.07
GSMUA_Achr8P21130_001	Banana	peroxisome	6.92	13.53

Protein Annotations

Gene3D:1.10.540.10	Gene3D:1.20.140.10	Gene3D:2.40.110.10	Gene3D:3.30.200.20	Gene3D:3.90.1200.10	MapMan:5.7.3.3.2
InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:AcylCoA_DH/ox_N	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C
InterPro:Aminoglycoside_PTrfase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0016049	GO:GO:0016627
GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G30030_001
EnsemblPlants:GSMUA_Achr8P30030_001	EnsemblPlants:GSMUA_Achr8T30030_001	InterPro:IPR037069	InterPro:Kinase-like_dom_sf	UniProt:M0TUV5	PFAM:PF00441
PFAM:PF01636	PFAM:PF02770	PFAM:PF02771	PANTHER:PTHR10909	PANTHER:PTHR10909:SF221	SUPFAM:SSF47203
SUPFAM:SSF56112	SUPFAM:SSF56645	UniParc:UPI0002969DB0	SEG:seg	:	:

Description

Putative Acyl-CoA dehydrogenase family member 10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30030_001]

Coordinates

chr8:-:32225205..32239485

Molecular Weight (calculated)

95010.7 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.177

Length

853 amino acids

Sequence
(BLAST)

001: MAFSTSDLLR SVQPAHRFDE AALLRYAAAN VAGLPAAPAK FSVSQFGYGQ SNPTFCLEVA SHGSPGVVKR YVLRKKPPGA LLESAHAVER EFQVLKALGV
101: HTDVPVPKVF CLCNDTSIIG TSFYIMEYLE GRIFMDNKLP GLSPERRKVI YQATAKTLAS LHKVDVDSIG LQKFGRRDNY CKRQVERWGK QYLASTGQGK
201: PDRNPKMLDL VVWLRENIPA EDSLGASGTG LVHGDYRIDN LVFHPVKDQV IGILDWELST LGNQMCDVAY SALLYIVDVA LGECESYGLE FSGIPEGIPS
301: LVEYLAVYCS AARRPWPVRE WKFYMAFSLF RGASIYAGVY HRWTLGNASG GERARYAGKA ANVLVDSAWA YITRESVLPD QPPLGNFDMI PSAFAVPYRT
401: GVSTRARYGT VRVYRPVYRD DHSLSMKEQG CSVPSQKVLE LRKKLLKFMQ DHVYQNESEF YRLSQSSQRW TVHPDEEKLK ELAKQEGLWN LWIPLDSAAR
501: ARKLLEEEKY FSTGASNSNL LGAGLSNLEY GYLCEIMGRS IWAPQIFNCG APDTGNMEVL LRYGTKEQLI EWLIPLLEGK IRSGFAMTEP QVASSDATNI
601: ECSLTRQGDF YIINGKKWWT SGAMDPRCKV LIVMGKTDFS APMHKQQSMI LVDVNTPGVH IRRPLLVFGF DDAPHGHAEI TFENVRVPVK NILLGEGRGF
701: EIAQGRLGPG RLHHCMRLIG AAERGMQMTV DRALRRRVFG KLIAEQGSFL SDLAKCRVEL EQARLLVFEA ADQLDRLGNK KARGTIAMAK VATPSMALKV
801: LDFAMQVHGA AGLSSDTVLA HLWATSRTLR IADGPDEVHL GTIAKLELRR AKL

Best Arabidopsis Sequence Match ( AT3G06810.1 )
(BLAST)

001: MGSSTGDLVT RIQSAHRFDH DALFRFAADN VSGFPTNPSQ FKVSQFGHGQ SNPTFLIEVG SGSSLKRYVL RKKPPGKLLQ SAHAVDREFQ VLRALGEHTQ
101: VPVPKVFCLC TDPAVIGTAF YIMEFMEGRI FIDPKLPNVA PERRNAIYRA TAKALASLHS ADVDAIGLEK YGRRGNYCKR QIDRWFKQYL ASTSEGKPER
201: NPKMFELVDW LRKNIPAEDS TGATSGLVHG DFRIDNLVFH PSEDRVIGII DWELSTLGNQ MCDVAYSCMH YIVNVQLDKE HVSEGFETTG LPEGMLSMPE
301: FLLEYCSASG KPWPAANWKF YVAFSLFRAA SIYTGVYSRW LMGNASAGER ARNTGVQANE LVESALGYIA RENVLPEHPP SVQRDVSPSY ESLVDGSGRF
401: IPNRKVLELR QKLIKFMETH IYPMENEFSK LAQSDMRWTV HPQEEKLKEM AKREGLWNLF VPVDSAARAR RELAATENKH NLSGKSFDQL FGEGLTNLEY
501: GYLCEIMGRS VWAPQVFNCG APDTGNMEVI LRYGNKEQIS EWLIPLLEGR IRSGFAMTEP QVASSDATNI ECSIRRQGDS YVINGTKWWT SGAMDPRCRV
601: LILMGKTDFN APKHKQQSMI LVDMRTPGIS VKRPLTVFGF DDAPHGHAEI SFENVVVPAK NILLGEGRGF EIAQGRLGPG RLHHCMRLIG AAERGMELMA
701: QRALSRKTFG KFIAQHGSFV SDLAKLRVEL EGTRLLVLEA ADHLDKFGNK KARGILAMAK VAAPNMALKV LDTAIQVHGA AGVSSDTVLA HLWATARTLR
801: IADGPDEVHL GTIGKLELQR ASKL

Arabidopsis Description

IBR3Probable acyl-CoA dehydrogenase IBR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.