Factsheet for Bra025842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001415.1-P
Bra002727.1-P
Bra002934.1-P
Bra006819.1-P
Bra009790.1-P
Bra010799.1-P
Bra015600.1-P
Bra022067.1-P
Bra026139.1-P
Bra026769.1-P
Bra028992.1-P
Bra029606.1-P
Bra033657.1-P
Bra034824.1-P
Bra035551.1-P
Bra036092.1-P
Bra036523.1-P
Bra038667.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20760.1	Bra026139.1-P	AT1G15370.1	24529374
AT1G20760.1	Bra026769.1-P	AT1G15370.1	24529374
AT1G20760.1	Bra015600.1-P	AT1G47830.1	24529374
AT1G20760.1	Bra022067.1-P	AT3G01780.1	24529374
AT1G20760.1	Bra029606.1-P	AT3G06810.1	24529374
AT1G20760.1	Bra001415.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra034824.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra038667.1-P	AT3G11630.1	24529374
AT1G20760.1	Bra036092.1-P	AT3G50590.1	24529374
AT1G20760.1	Bra009790.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra010799.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra036523.1-P	AT5G24710.1	24529374
AT1G20760.1	Bra033657.1-P	AT5G43060.1	24529374
AT1G20760.1	Bra002934.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra028992.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra035551.1-P	AT5G55070.1	24529374
AT1G20760.1	Bra002727.1-P	AT5G57460.1	24529374
AT1G20760.1	Bra006819.1-P	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29508	Canola	cytosol	97.11	98.09
Bra012247.1-P	Field mustard	cytosol	89.23	89.5
AT1G20760.1	Thale cress	cytosol	88.24	86.85
Bra016455.1-P	Field mustard	nucleus, plastid	83.95	74.19
KRH60909	Soybean	endoplasmic reticulum	54.44	51.41
KRH51589	Soybean	endoplasmic reticulum	54.34	50.65
PGSC0003DMT400025666	Potato	cytosol	8.18	50.62
VIT_18s0122g01080.t01	Wine grape	cytosol	50.75	50.6
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	40.48	42.87
GSMUA_Achr8P13420_001	Banana	cytosol	40.68	42.86
Solyc02g082530.1.1	Tomato	nucleus	3.99	41.24
Os03t0130500-01	Rice	plasma membrane	43.57	40.92
EER92924	Sorghum	cytosol	42.47	40.77
TraesCS4D01G321600.1	Wheat	cytosol	42.97	39.58
TraesCS4B01G324500.1	Wheat	cytosol	42.47	39.55
TraesCS5A01G497000.1	Wheat	cytosol	42.67	39.48
GSMUA_Achr4P11750_001	Banana	cytosol	41.18	38.49
HORVU4Hr1G082280.2	Barley	cytosol	42.77	37.93
Solyc04g082560.2.1	Tomato	cytosol	46.06	37.62
Bra012288.1-P	Field mustard	cytosol	41.38	36.63
Os06t0728600-00	Rice	plasma membrane	32.0	35.91
Bra016413.1-P	Field mustard	cytosol	40.48	35.61
Zm00001d048338_P035	Maize	cytosol	38.38	35.48
Zm00001d027503_P036	Maize	cytosol	36.39	34.4
EER89004	Sorghum	cytosol	39.48	32.3
Zm00001d037125_P009	Maize	cytosol	38.88	32.28
Zm00001d014862_P002	Maize	cytosol	38.88	32.2
Bra017933.1-P	Field mustard	cytosol	39.48	32.12
TraesCS7B01G476800.3	Wheat	cytosol	39.48	30.48
TraesCS7D01G539600.2	Wheat	cytosol	39.18	30.42
TraesCS7A01G553100.1	Wheat	cytosol	39.18	30.37
HORVU7Hr1G121230.4	Barley	cytosol	38.19	29.55
Bra035794.1-P	Field mustard	cytosol	10.67	20.38
Bra029477.1-P	Field mustard	cytosol	10.37	19.05
Bra038259.1-P	Field mustard	cytosol	10.27	18.07

Protein Annotations

Gene3D:1.10.238.10	MapMan:22.1.4.7	EnsemblPlantsGene:Bra025842	EnsemblPlants:Bra025842.1	EnsemblPlants:Bra025842.1-P	ncoils:Coil
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:EH_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	InterPro:IPR000261	InterPro:IPR002048	UniProt:M4EAN3	PFAM:PF12763
ScanProsite:PS00018	PFscan:PS50031	PFscan:PS50222	PANTHER:PTHR11216	PANTHER:PTHR11216:SF116	SMART:SM00027
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000253EFD5	SEG:seg	:	:

Description

AT1G20760 (E=0.0) | calcium-binding EF hand family protein

Coordinates

chrA06:+:8392107..8396957

Molecular Weight (calculated)

108021.0 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.777

Length

1003 amino acids

Sequence
(BLAST)

0001: MDQFEAYFKR ADLDGDGRIS GAEAVGFFQG SGLPKQVLAQ IWSLSDRSRS GFLGRQDFYN SLRLVTVAQS KRDLTPEIVN AALNTPAAAK IPPPKINLAA
0101: IPAPAPAPQP NPAATTARPV GSTGHQNVGF RGPGAPNANL NQNYFPPQQN QQVRPNQGVS GMTSLRPTAA GPEHRPSALP GQFQPVPAGS VSRPPQAVPT
0201: GAPGPGSSPF NLNNLYAGNT SGYSSGFGGG SLAAPSPGVR PESQVDARAL VVSGNGGDMF SSFQQKQEPT LSNSSISSAI VPASAGTQPP VKPNALDSLQ
0301: NTFSMLPSGN QPQQPRPAAS SQQPRPASSL QPPAVSSQGP SSGLPHASSV GSGHSVPAGN NQPPWPKMKP SDVQKYTKVF MGVDTDRDGK ITGEQARNLF
0401: LSWRLPREVL KHVWELSDQD NDTMLSLREF CISLYLMERY REGRPLPTSL PSSIMYDETL LSISGAPSHG YANAGWGAGQ GFVQQPVMGA RPNNPQTGMR
0501: PPVPHPGSGI APNQQRNQAP ALDDPFASHL GNGHSASSNL QETATDGEKV EEKKNAYMDS REKLEYYRTK MQDIVLYKSR CDNRLNEISE RASADKREAE
0601: TLAKKYEEKY KQVAVLGSKL TIEEARFREI EGRKMELSQA IVNMEQGGSA DGLLQVRADR IQSDLEELMK ALTERCKKHG LEVKSKALVD LPAGWQPGIQ
0701: EGAALWDEEW DKFEDEGFGN EITFDKSKEQ NSSGEKENGT VDDGTGPPDS PTHLDENYGP FSETSERHHE SEDDSGRSPR DSPVSRTGTE IPSPDSHGKN
0801: SEFFDDSNWA SAFDTNDDVD SVWGFDASKS QDGDYFGSGG DFGGNSARVD SPTSRSFGGQ RKSTYAFDDS VPSTPLSRFG NSPPRFSDAS ARDSNFDSFS
0901: RFDSFNASEA GAGFSSSQPE RLSRFDSINS SKDFGGAAFS RFDSINSSRD FGGPSLSRFD SMNSTKDHGY SFDDADPFGS TGPFKVSSDD QSPKKKSDNW
1001: NSF

Best Arabidopsis Sequence Match ( AT1G20760.1 )
(BLAST)

0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.