Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048338_P035 | Maize | cytosol | 88.97 | 87.0 |
| EER92924 | Sorghum | cytosol | 81.9 | 83.16 |
| Os03t0130500-01 | Rice | plasma membrane | 69.37 | 68.91 |
| TraesCS4D01G321600.1 | Wheat | cytosol | 69.27 | 67.49 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 68.71 | 67.25 |
| TraesCS4B01G324500.1 | Wheat | cytosol | 68.14 | 67.13 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 68.61 | 64.37 |
| KRH74100 | Soybean | cytosol | 7.07 | 56.39 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 38.55 | 43.19 |
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 36.57 | 42.64 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 37.13 | 41.39 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 38.45 | 40.56 |
| KRH60909 | Soybean | endoplasmic reticulum | 38.36 | 38.32 |
| KRH14013 | Soybean | endoplasmic reticulum | 37.23 | 38.09 |
| CDY01356 | Canola | cytosol | 34.59 | 37.45 |
| CDX96625 | Canola | cytosol | 34.5 | 37.35 |
| KRH51589 | Soybean | endoplasmic reticulum | 37.7 | 37.17 |
| CDY31869 | Canola | cytosol | 34.4 | 36.83 |
| Bra012247.1-P | Field mustard | cytosol | 34.68 | 36.8 |
| CDY66337 | Canola | cytosol | 34.31 | 36.77 |
| CDY29508 | Canola | cytosol | 34.31 | 36.66 |
| Bra025842.1-P | Field mustard | cytosol | 34.4 | 36.39 |
| CDY33644 | Canola | cytosol | 34.02 | 36.32 |
| AT1G20760.1 | Thale cress | cytosol | 34.4 | 35.82 |
| KRH74101 | Soybean | endoplasmic reticulum | 28.75 | 35.55 |
| Solyc02g082540.2.1 | Tomato | nucleus | 34.68 | 35.38 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 33.84 | 31.63 |
| Solyc04g082560.2.1 | Tomato | cytosol | 36.0 | 31.11 |
| CDY08192 | Canola | cytosol | 33.36 | 30.44 |
| CDY38814 | Canola | cytosol | 32.33 | 29.98 |
| CDY04654 | Canola | cytosol | 33.18 | 29.91 |
| CDY00394 | Canola | cytosol | 32.23 | 29.9 |
| Bra012288.1-P | Field mustard | cytosol | 31.76 | 29.74 |
| CDY01320 | Canola | cytosol | 32.61 | 29.3 |
| CDX96582 | Canola | cytosol | 31.48 | 29.22 |
| Bra016413.1-P | Field mustard | cytosol | 31.2 | 29.04 |
| AT1G21630.2 | Thale cress | cytosol | 33.84 | 28.79 |
| Zm00001d014862_P002 | Maize | cytosol | 32.61 | 28.57 |
| Zm00001d037125_P009 | Maize | cytosol | 32.42 | 28.48 |
| Bra017933.1-P | Field mustard | cytosol | 33.08 | 28.47 |
| Zm00001d014526_P002 | Maize | cytosol | 9.71 | 18.83 |
| Zm00001d053858_P001 | Maize | cytosol, extracellular | 9.52 | 18.46 |
| Zm00001d001906_P004 | Maize | cytosol | 8.58 | 14.31 |
| PGSC0003DMT400025666 | Potato | cytosol | 1.7 | 11.11 |
| Solyc02g082530.1.1 | Tomato | nucleus | 0.09 | 1.03 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | UniProt:A0A1D6JMN9 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 |
| InterPro:IPR000261 | InterPro:IPR002048 | ProteinID:ONL93295.1 | PFAM:PF12763 | PFAM:PF13202 | ScanProsite:PS00018 |
| PFscan:PS50031 | PFscan:PS50222 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000842D3E6 | EnsemblPlantsGene:Zm00001d027503 | EnsemblPlants:Zm00001d027503_P036 | EnsemblPlants:Zm00001d027503_T036 | SEG:seg |
Description
Calcium-binding EF hand family protein
Coordinates
chr1:-:6829949..6840503
Molecular Weight (calculated)
113399.0 Da
IEP (calculated)
6.835
GRAVY (calculated)
-0.447
Length
1061 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAGTEAFEA YFRRADLDQD GRISGQEAVA FFQGANLPQP VLAQVWMHAD QNKTGFLGRP EFFNALRLVT VAQSGRQLTP DIVQSALYGP AAARIPAPKI
0101: AAGAARSQMG AAGAPRPQGS AAMTPGQVGA AQMNPAGTPR PQGSGMMPTS TQVSMLQVNP GAAPRPQGIS SMMPAASQGG ALQATQFAAP RAMQPQPPNL
0201: GITQQQPSST GFMRPPQVGT PAASFQAQAP GINQGLVHGG SMEGSISWQG GNAASVGGIP RAIPGAAPSQ TTRGFGPGLP STMGMVPGQQ VQAMSSSPLP
0301: PQSNSAVLPQ NSKALVLSGN GPASSSGSST DIFSALTQPK PSLSAPQTSS IPSSSSFMAT PTGSQNLTNL TQFGSLQGSS QPQQTQPIVK SIPAPATPVV
0401: SAGISNSASQ WPKITQPDIQ KYMKVFGDVD RDRDGKITGA EARTLFLSWR LPREVLKQVW DLSDQDNDGM LSLREFCIAL YLMERHRAGI PLPPALPDSL
0501: RHDETLLRAT GLPSTAYNSP SWQHNQGGLP QRGPGAPGVP AGGVRPPLPS HLHSQTDGAS RQGQPRSHMP GMDNHVVIQG NKDDKSALNQ AAQEVVDAPK
0601: KVEVEKQVLD SREKLEYYRT KMQDLVLYKS RCENRLNEIT ERASSDKREV ESLAKKYEEK YKQVAELASK LAVEEAAYRD VQERKVELHD ALIKMVQGGS
0701: VDGLLQVRAD RIQYQLEEME KALSERCKHF ELKFKPSASV ELPSGWEPGP QEGLIEWDED WDKFEDEGFS IVKDNGTIQE NPVSAENGKV PSLWDDGDMS
0801: PVASSNGHIK EERRYSGGDQ VAESEIAYDF GDESVRSPGS AGRSASGSPF KSSGFGMHDS SPSKRESYSD HGGSESVFGD KFADETSWNF DDQDTDSVWG
0901: STVLNTVRRP TNAVARITLS LGRRQAHQVA LVYLERRGIH SSTILFQVLL HTHLGSLQNL AKAVTIAPLI TSGGLIPSDP KTLDPSLRKA VSPGSTPLAA
1001: PRARMYQDLT QGIAHEILAG LTLLMTPTHS VQVDLLKHRE AGLHPSSDML SALIRVLCLA S
0101: AAGAARSQMG AAGAPRPQGS AAMTPGQVGA AQMNPAGTPR PQGSGMMPTS TQVSMLQVNP GAAPRPQGIS SMMPAASQGG ALQATQFAAP RAMQPQPPNL
0201: GITQQQPSST GFMRPPQVGT PAASFQAQAP GINQGLVHGG SMEGSISWQG GNAASVGGIP RAIPGAAPSQ TTRGFGPGLP STMGMVPGQQ VQAMSSSPLP
0301: PQSNSAVLPQ NSKALVLSGN GPASSSGSST DIFSALTQPK PSLSAPQTSS IPSSSSFMAT PTGSQNLTNL TQFGSLQGSS QPQQTQPIVK SIPAPATPVV
0401: SAGISNSASQ WPKITQPDIQ KYMKVFGDVD RDRDGKITGA EARTLFLSWR LPREVLKQVW DLSDQDNDGM LSLREFCIAL YLMERHRAGI PLPPALPDSL
0501: RHDETLLRAT GLPSTAYNSP SWQHNQGGLP QRGPGAPGVP AGGVRPPLPS HLHSQTDGAS RQGQPRSHMP GMDNHVVIQG NKDDKSALNQ AAQEVVDAPK
0601: KVEVEKQVLD SREKLEYYRT KMQDLVLYKS RCENRLNEIT ERASSDKREV ESLAKKYEEK YKQVAELASK LAVEEAAYRD VQERKVELHD ALIKMVQGGS
0701: VDGLLQVRAD RIQYQLEEME KALSERCKHF ELKFKPSASV ELPSGWEPGP QEGLIEWDED WDKFEDEGFS IVKDNGTIQE NPVSAENGKV PSLWDDGDMS
0801: PVASSNGHIK EERRYSGGDQ VAESEIAYDF GDESVRSPGS AGRSASGSPF KSSGFGMHDS SPSKRESYSD HGGSESVFGD KFADETSWNF DDQDTDSVWG
0901: STVLNTVRRP TNAVARITLS LGRRQAHQVA LVYLERRGIH SSTILFQVLL HTHLGSLQNL AKAVTIAPLI TSGGLIPSDP KTLDPSLRKA VSPGSTPLAA
1001: PRARMYQDLT QGIAHEILAG LTLLMTPTHS VQVDLLKHRE AGLHPSSDML SALIRVLCLA S
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.