Factsheet for Zm00001d053858_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84412	Sorghum	cytosol	97.08	97.08
Os02t0158100-01	Rice	cytosol	89.4	90.06
TraesCS6B01G159700.1	Wheat	cytosol	88.48	88.48
TraesCS6D01G121200.1	Wheat	cytosol	88.3	88.3
Zm00001d014526_P002	Maize	cytosol	84.28	84.28
PGSC0003DMT400034517	Potato	cytosol	44.06	83.97
TraesCS6A01G131300.2	Wheat	cytosol, plastid	88.12	81.01
HORVU0Hr1G015420.3	Barley	cytosol, plastid	87.93	79.9
VIT_00s0516g00020.t01	Wine grape	cytosol	79.52	79.09
GSMUA_Achr5P23200_001	Banana	cytosol	76.97	77.82
KRH11510	Soybean	cytosol	75.32	76.44
KRH36524	Soybean	cytosol	75.32	76.44
KRH02006	Soybean	cytosol	75.87	76.15
KRH51151	Soybean	cytosol	75.5	75.78
CDX94536	Canola	cytosol	74.59	74.59
Bra029477.1-P	Field mustard	cytosol	74.41	74.54
CDY16689	Canola	cytosol	74.41	74.54
AT4G05520.1	Thale cress	cytosol	74.41	74.54
Solyc11g012020.1.1	Tomato	cytosol	73.49	73.49
GSMUA_Achr5P23220_001	Banana	cytosol	63.44	68.58
HORVU7Hr1G060580.1	Barley	cytosol, plastid	53.75	67.59
Zm00001d001906_P004	Maize	cytosol	68.74	59.12
KRH45544	Soybean	cytosol	23.22	54.27
Zm00001d027503_P036	Maize	cytosol	18.46	9.52
Zm00001d048338_P035	Maize	cytosol	18.1	9.12
Zm00001d037125_P009	Maize	cytosol	17.37	7.86
Zm00001d014862_P002	Maize	cytosol	17.18	7.76

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	EntrezGene:100272658	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK60536.1
UniProt:B4FPT9	EMBL:BT039127	ncoils:Coil	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031	PFscan:PS50222
PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027	SUPFAM:SSF47473	SUPFAM:SSF52540
UniParc:UPI00017B75A8	EnsemblPlantsGene:Zm00001d053858	EnsemblPlants:Zm00001d053858_P001	EnsemblPlants:Zm00001d053858_T001	:	:

Description

EH domain-containing protein 1

Coordinates

chr4:+:242390665..242395306

Molecular Weight (calculated)

61078.4 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.281

Length

547 amino acids

Sequence
(BLAST)

001: MDIARAAAGV ACCKEHQRIY AEWFALADPD GDGRVTGADA TSFFAMSALS RADLKQVWAI ADSRRQGYLG FAEFVTAMQL VSLAQAGNEI TQDSLKREDL
101: STLDPPVMEG VDELLARSKA VVKRVHPDDN GTTQAQAPSI YHWFGSKSAQ KVQMPLTAVT SVIDGLKRLY VEKLKPLEVA YRYNDFSHPL LTNSDFEAKP
201: MVMLLGQYST GKTTFIKHLL KTSYPGAHVG PEPTTDRFVV VMSGSDGRTI PGNTIAVQAD MPFTGLTTFG GAFLSKFECS QMPHPLLEHI TFVDTPGVLS
301: GEKQRTQRSY DFTGVTSWFA AKCDLILLLF DPHKLDISDE FKRVISSLRG HDDKIRVVLN KADQVDTQQL MRVYGALMWS LGKVLNTPEV VRVYIGSFND
401: KPVNDSAVGP IGKDLFEREQ DDLLCDLKDI PKKACDRRVN EFVKRARAAK IHAYIIGHLK KEMPAMMGKA KAQQRLIDNL DEEFAKVQRE YHLPAGDFPD
501: VEHFKQVLGG YSIDKFEKLK PKMVQAVDDM LAHDIPELLK NLRNPYE

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.