Factsheet for VIT_00s0516g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034517	Potato	cytosol	44.55	85.37
VIT_19s0090g01130.t01	Wine grape	cytosol	84.36	85.14
Os06t0687800-01	Rice	plasma membrane	81.27	82.17
KRH36524	Soybean	cytosol	80.36	82.0
EER88852	Sorghum	cytosol	81.09	81.99
KRH51151	Soybean	cytosol	81.09	81.83
KRH11510	Soybean	cytosol	80.0	81.63
KRH02006	Soybean	cytosol	80.73	81.47
Os02t0158100-01	Rice	cytosol	80.18	81.22
TraesCS7D01G430800.1	Wheat	cytosol	80.0	80.73
TraesCS7B01G340200.2	Wheat	cytosol	79.82	80.55
TraesCS7A01G441500.1	Wheat	cytosol	79.82	80.55
Zm00001d014526_P002	Maize	cytosol	79.82	80.26
OQU84412	Sorghum	cytosol	79.82	80.26
TraesCS6D01G121200.1	Wheat	cytosol	79.64	80.07
TraesCS6B01G159700.1	Wheat	cytosol	79.45	79.89
AT4G05520.1	Thale cress	cytosol	79.27	79.85
Zm00001d053858_P001	Maize	cytosol, extracellular	79.09	79.52
GSMUA_Achr4P20130_001	Banana	cytosol	78.18	79.19
CDY16689	Canola	cytosol	78.18	78.75
Bra029477.1-P	Field mustard	cytosol	78.0	78.57
CDX94536	Canola	cytosol	78.0	78.43
GSMUA_Achr5P23200_001	Banana	cytosol	76.55	77.82
Solyc11g012020.1.1	Tomato	cytosol	77.27	77.7
EES11620	Sorghum	cytosol	73.82	74.91
Os04t0669300-01	Rice	plasma membrane	73.64	74.72
TraesCS6A01G131300.2	Wheat	cytosol, plastid	79.27	73.28
HORVU0Hr1G015420.3	Barley	cytosol, plastid	79.64	72.76
TraesCS2D01G544000.1	Wheat	cytosol	70.18	70.7
TraesCS2A01G542800.1	Wheat	cytosol	70.18	70.7
HORVU2Hr1G122390.1	Barley	cytosol	70.36	70.62
TraesCS2B01G572600.1	Wheat	cytosol	70.0	70.51
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	78.55	69.01
GSMUA_Achr5P23220_001	Banana	cytosol	62.36	67.79
HORVU7Hr1G100500.8	Barley	cytosol, plastid	76.73	66.46
Zm00001d001906_P004	Maize	cytosol	69.64	60.22
KRH45544	Soybean	cytosol	25.45	59.83
HORVU7Hr1G060580.1	Barley	cytosol, plastid	47.09	59.54
GSMUA_Achr3P20110_001	Banana	cytosol	16.73	58.6
VIT_18s0122g01080.t01	Wine grape	cytosol	21.82	11.93
VIT_03s0038g03870.t01	Wine grape	cytosol	19.09	11.54

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	EntrezGene:100262940	wikigene:100262940	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CCB59154	ProteinID:CCB59154.1	ncoils:Coil	InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
InterPro:EHD_N	InterPro:EH_dom	UniProt:F6HWU0	EMBL:FN596298	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032956	GO:GO:0043231
GO:GO:0051260	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	EntrezGene:LOC100262940
wikigene:LOC100262940	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031
PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF76	SMART:SM00027	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI000210A1EB	ArrayExpress:VIT_00s0516g00020	EnsemblPlantsGene:VIT_00s0516g00020	EnsemblPlants:VIT_00s0516g00020.t01
RefSeq:XP_002264320	RefSeq:XP_002264320.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:31055721..31060441

Molecular Weight (calculated)

61788.1 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.339

Length

550 amino acids

Sequence
(BLAST)

001: MEIASVPISS CSKHNQKIYQ EWFNYADSDN DGRITGNDAT KFFAMSNLSR SELKQVWAIA DSKRQGFLGF REFITAMQLV SLAQAGNEIT SDILKTTGKQ
101: NNITLFNLEP PSMEGLNALL AKNKVSTNNG ELELNGDSRP QPSPSAPWFT SKSVKKAPLN SVTSIIDGLK RLYNEKLKPL EVTYRYNDFV SPLLTHSDFD
201: AKPMVMLLGQ YSTGKTTFIK HLLGCNFPGA HIGPEPTTDR FVVVMSGPDE RSIPGNTIAV NAEMPFNGLT TFGGAFLSKF ECSQIPHSLL EHITFVDTPG
301: VLSGEKQRTQ RSYDFTGVIS WFAAKCDLIL LLFDPHKLDI SDEFKRVIAS LRGNDDKIRV VLNKADQVDT QQLMRVYGAL MWSLGKVLNT PEVVRVYIGS
401: FNDKPVNEAA VGPIGKDLFE KEQDDLLADL IDIPKKACDR RINEFVKRAR AAKIHAYIIS HLKKEMPAMM GKAKAQQRLT DNLEDEFAKI QREFHLPAGD
501: FPNVEHFREV LNGYSIDKFE KLKPKMIQAV DDMLGYDIPE LLKNFRNPYE

Best Arabidopsis Sequence Match ( AT4G05520.1 )
(BLAST)

001: METSSTISIG SCLKEHQKIY KEWFNIADSD GDGRVSGNDA TKFFAMSKLS RQELKQVWAV ADSKRQGFLG LSEFITAMKL VSLAQEGHEI TSDLLKGSID
101: MKSVELPVLE GLENVVSKQK VSKTNVDVED NVVTKPQVTA KTPWFKSKSI IKPQVNVVTI VDGLKRLYTE KLKPLEVTYR FNDFASPVLT SSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLGC DYPGAHIGPE PTTDRFVVAM SGPDERTIPG NTMAVQADMP FNGLTSFGGA FLSKFECSQM PHPVLDQITL VDTPGVLSGE
301: KQRMQRSYDF TGVISWFASK CDMILLLFDP HKLDISDEFK RVITSLRGNE DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVVR VYIGSFNDKP
401: INEVAVGPIG KELFEKEQND LLADLMDVPK KACDRKINEF VKRARSAKIN AYIMSHLKKE MPAMMGKSKA QQRLMDNLEE EFGKVQREFH LPAGDFPSVE
501: HFREVLGGYN IDKFEKLKPK MIQAVDDMLG YDIPDLLKKF RNPYDN

Arabidopsis Description

EHD2EH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:B3LF48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.