Factsheet for TraesCS6D01G121200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G159700.1	Wheat	cytosol	99.27	99.27
TraesCS6A01G131300.2	Wheat	cytosol, plastid	99.45	91.43
Os02t0158100-01	Rice	cytosol	89.76	90.42
HORVU0Hr1G015420.3	Barley	cytosol, plastid	97.99	89.04
OQU84412	Sorghum	cytosol	88.85	88.85
Zm00001d053858_P001	Maize	cytosol, extracellular	88.3	88.3
TraesCS7D01G430800.1	Wheat	cytosol	83.0	83.3
PGSC0003DMT400034517	Potato	cytosol	42.96	81.88
VIT_00s0516g00020.t01	Wine grape	cytosol	80.07	79.64
GSMUA_Achr5P23200_001	Banana	cytosol	75.87	76.71
HORVU7Hr1G060580.1	Barley	cytosol, plastid	60.88	76.55
KRH36524	Soybean	cytosol	75.32	76.44
KRH51151	Soybean	cytosol	76.05	76.33
KRH02006	Soybean	cytosol	75.87	76.15
KRH11510	Soybean	cytosol	74.95	76.07
AT4G05520.1	Thale cress	cytosol	75.5	75.64
CDY16689	Canola	cytosol	75.5	75.64
Bra029477.1-P	Field mustard	cytosol	75.5	75.64
CDX94536	Canola	cytosol	75.32	75.32
Solyc11g012020.1.1	Tomato	cytosol	74.04	74.04
TraesCS2D01G544000.1	Wheat	cytosol	70.38	70.51
GSMUA_Achr5P23220_001	Banana	cytosol	63.44	68.58
KRH45544	Soybean	cytosol	22.67	52.99
TraesCS4D01G321600.1	Wheat	cytosol	20.11	10.1
TraesCS7D01G539600.2	Wheat	cytosol	17.92	7.59

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_SF
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261
InterPro:IPR002048	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880
PFscan:PS50031	PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027
SUPFAM:SSF47473	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6D01G121200	EnsemblPlants:TraesCS6D01G121200.1	TIGR:cd00052	TIGR:cd09913

Description

No Description!

Coordinates

chr6D:-:86143815..86147977

Molecular Weight (calculated)

60830.1 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.290

Length

547 amino acids

Sequence
(BLAST)

001: MEIARSAAAV GCSKEHQRIY ADWFAIADPD GDGRVTGADA TKFFAMSGLS RADLKQVWAI ADSKRQGYLG FGEFAAAMQL VSLAQAGNEI TQDSLKREDL
101: SSLDPPGMKG LDELLARSMA IVNVVRPQEN GTPQVQAPST NSWFSSKSAK KIQTPLTAVT SVIDGLKRLY IEKLKPLEVA YRFNDFASPL LTNSDFDAKP
201: MVMLLGQYST GKTTFIKHLL KSNFPGAHIG PEPTTDRFVV VMSGSDERTV PGNTIAVQAD MPFNGLTTFG GAFLSKFECS QMPHPLLDHI TFVDTPGVLS
301: GEKQRTQRSY DFTGVTSWFA AKCDVILLLF DPHKLDISDE FKRVISSLRG NEDKIRVVLN KADQVDTQQL MRVYGALMWS LGKVLNTPEV MRVYIGSFND
401: KPVNESAVGP IGKELFEKEQ EDLLADLKDI PKKACDRRVN EFVKRARAAK IHAYIIGQLK KEMPAMMGKA KAQQRLIDNL QDEFAKVQRE YHLPAGDFPD
501: VEHFKQVLAG YSIDKFEKMK PKMVQAVDDM LAHDIPDLLK NFSNPYQ

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.