Factsheet for TraesCS6A01G131300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G121200.1	Wheat	cytosol	91.43	99.45
TraesCS6B01G159700.1	Wheat	cytosol	91.43	99.45
HORVU0Hr1G015420.3	Barley	cytosol, plastid	97.82	96.68
Os02t0158100-01	Rice	cytosol	82.35	90.24
OQU84412	Sorghum	cytosol	81.51	88.67
Zm00001d053858_P001	Maize	cytosol, extracellular	81.01	88.12
HORVU7Hr1G060580.1	Barley	cytosol, plastid	63.87	87.36
TraesCS7A01G441500.1	Wheat	cytosol	76.3	83.3
PGSC0003DMT400034517	Potato	cytosol	39.33	81.53
VIT_00s0516g00020.t01	Wine grape	cytosol	73.28	79.27
GSMUA_Achr5P23200_001	Banana	cytosol	69.75	76.71
KRH36524	Soybean	cytosol	69.24	76.44
KRH51151	Soybean	cytosol	69.92	76.33
KRH02006	Soybean	cytosol	69.75	76.15
KRH11510	Soybean	cytosol	68.91	76.07
AT4G05520.1	Thale cress	cytosol	69.41	75.64
CDY16689	Canola	cytosol	69.41	75.64
Bra029477.1-P	Field mustard	cytosol	69.41	75.64
CDX94536	Canola	cytosol	69.24	75.32
Solyc11g012020.1.1	Tomato	cytosol	67.73	73.67
TraesCS2A01G542800.1	Wheat	cytosol	64.03	69.78
GSMUA_Achr5P23220_001	Banana	cytosol	57.98	68.18
KRH45544	Soybean	cytosol	21.01	53.42
TraesCS5A01G497000.1	Wheat	cytosol	18.66	10.24
TraesCS7A01G553100.1	Wheat	cytosol	16.3	7.5

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_SF
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom	InterPro:IPR000261
InterPro:IPR002048	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880
PFscan:PS50031	PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027
SUPFAM:SSF47473	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6A01G131300	EnsemblPlants:TraesCS6A01G131300.2	TIGR:cd00052	TIGR:cd09913
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:103760019..103764125

Molecular Weight (calculated)

66404.9 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.369

Length

595 amino acids

Sequence
(BLAST)

001: MPPHSTPKRG RRDEHPHPVR FPFVHSCCRC CSRPPPPPPP PTRGGRPWME IARSAAAVGC SKEHQRIYAD WFAIADPDGD GRVTGADATK FFAMSGLSRA
101: DLKQVWAIAD SKRQGYLGFG EFAAAMQLVS LAQAGNEITQ DSLKREDLSS FDPPVMKGLD ELLARSMAIV NVVRPQENGT PQVQAPSTNS WFSSKSAKKI
201: QTPLTAVTSV IDGLKRLYIE KLKPLEVAYR FNDFASPLLT NSDFDAKPMV MLLGQYSTGK TTFIKHLLKS NFPGAHIGPE PTTDRFVVVM SGSDERTVPG
301: NTIAVQADMP FNGLTTFGGA FLSKFECSQM PHPLLDHITF VDTPGVLSGE KQRTQRSYDF TGVTSWFAAK CDVILLLFDP HKLDISDEFK RVISSLRGNE
401: DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVMR VYIGSFNDKP VNESAVGPIG KELFEKEQED LLADLKDIPK KACDRRVNEF VKRARAAKIH
501: AYIIGQLKKE MPAMMGKAKA QQRLIDNLQD EFAKVQREYH LPAGDFPDLE HFKQVLAGYS IDKFEKMKPK MVQAVDDMLA HDIPDLLKNF SNPYQ

Best Arabidopsis Sequence Match ( AT4G05520.1 )
(BLAST)

001: METSSTISIG SCLKEHQKIY KEWFNIADSD GDGRVSGNDA TKFFAMSKLS RQELKQVWAV ADSKRQGFLG LSEFITAMKL VSLAQEGHEI TSDLLKGSID
101: MKSVELPVLE GLENVVSKQK VSKTNVDVED NVVTKPQVTA KTPWFKSKSI IKPQVNVVTI VDGLKRLYTE KLKPLEVTYR FNDFASPVLT SSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLGC DYPGAHIGPE PTTDRFVVAM SGPDERTIPG NTMAVQADMP FNGLTSFGGA FLSKFECSQM PHPVLDQITL VDTPGVLSGE
301: KQRMQRSYDF TGVISWFASK CDMILLLFDP HKLDISDEFK RVITSLRGNE DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVVR VYIGSFNDKP
401: INEVAVGPIG KELFEKEQND LLADLMDVPK KACDRKINEF VKRARSAKIN AYIMSHLKKE MPAMMGKSKA QQRLMDNLEE EFGKVQREFH LPAGDFPSVE
501: HFREVLGGYN IDKFEKLKPK MIQAVDDMLG YDIPDLLKKF RNPYDN

Arabidopsis Description

EHD2EH domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:B3LF48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.