Factsheet for PGSC0003DMT400034517

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012020.1.1	Tomato	cytosol	97.91	51.37
VIT_00s0516g00020.t01	Wine grape	cytosol	85.37	44.55
Os02t0158100-01	Rice	cytosol	83.62	44.2
Zm00001d053858_P001	Maize	cytosol, extracellular	83.97	44.06
OQU84412	Sorghum	cytosol	83.97	44.06
Bra029477.1-P	Field mustard	cytosol	83.28	43.77
CDY16689	Canola	cytosol	83.28	43.77
Os06t0687800-01	Rice	plasma membrane	82.93	43.75
CDX94536	Canola	cytosol	83.28	43.69
AT4G05520.1	Thale cress	cytosol	82.93	43.59
PGSC0003DMT400033476	Potato	cytosol	82.23	43.3
EER88852	Sorghum	cytosol	81.53	43.01
TraesCS6B01G159700.1	Wheat	cytosol	81.88	42.96
TraesCS6D01G121200.1	Wheat	cytosol	81.88	42.96
PGSC0003DMT400057437	Potato	cytosol	81.53	42.94
TraesCS7D01G430800.1	Wheat	cytosol	81.53	42.94
TraesCS7B01G340200.2	Wheat	cytosol	81.53	42.94
TraesCS7A01G441500.1	Wheat	cytosol	81.53	42.94
PGSC0003DMT400037353	Potato	cytosol	80.84	42.73
GSMUA_Achr5P23200_001	Banana	cytosol	80.49	42.7
KRH51151	Soybean	cytosol	80.49	42.39
GSMUA_Achr4P20130_001	Banana	cytosol	80.14	42.36
KRH36524	Soybean	cytosol	79.44	42.3
KRH02006	Soybean	cytosol	79.79	42.02
KRH11510	Soybean	cytosol	78.75	41.93
Zm00001d014526_P002	Maize	cytosol	79.44	41.68
Os04t0669300-01	Rice	plasma membrane	78.05	41.33
EES11620	Sorghum	cytosol	77.0	40.77
TraesCS2D01G544000.1	Wheat	cytosol	75.26	39.56
HORVU2Hr1G122390.1	Barley	cytosol	75.26	39.42
TraesCS2A01G542800.1	Wheat	cytosol	74.91	39.38
TraesCS2B01G572600.1	Wheat	cytosol	74.91	39.38
TraesCS6A01G131300.2	Wheat	cytosol, plastid	81.53	39.33
HORVU0Hr1G015420.3	Barley	cytosol, plastid	81.53	38.87
GSMUA_Achr5P23220_001	Banana	cytosol	66.55	37.75
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	79.79	36.58
HORVU7Hr1G100500.8	Barley	cytosol, plastid	78.05	35.28
Zm00001d001906_P004	Maize	cytosol	75.96	34.28
HORVU7Hr1G060580.1	Barley	cytosol, plastid	26.13	17.24
KRH45544	Soybean	cytosol	10.1	12.39
GSMUA_Achr3P20110_001	Banana	cytosol	2.79	5.1
PGSC0003DMT400025666	Potato	cytosol	2.79	4.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400034517	EnsemblPlantsGene:PGSC0003DMG400013265	Gene3D:1.10.268.20	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:Dynamin_SF	InterPro:G_DYNAMIN_dom	InterPro:IPR030381	InterPro:P-loop_NTPase
ncoils:Coil	PANTHER:PTHR11216	PANTHER:PTHR11216:SF76	PFAM:PF00350	PFscan:PS51718	PGSC:PGSC0003DMG400013265
SEG:seg	SUPFAM:SSF52540	UniParc:UPI000296DD92	UniProt:M1B0T8	MapMan:35.1	:

Description

EH-domain-containing protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013265]

Coordinates

chr11:-:759841..761611

Molecular Weight (calculated)

32952.9 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.374

Length

287 amino acids

Sequence
(BLAST)

001: MPFTDLTKFG GAFLSKFECS QLPHSLLDHI SFVDTPGVLS GEKQRTERSY DFTGVISWFA AKCDMILLLF DPHKLDISDE FKRVISSLKG HEDKIRVVLN
101: KADQVDTQQL MRVYGALMWS LGKVLNTPEV VRVYIGSFND KPVNEEAIGS MGKGLFEKEQ DDLLDDLIDI PKKACDRRIN EFVKRARAAK IHAYIMSHLK
201: KEMPALMGKS KTQQKLIQNL DNEFEKVQKA FRLPAGDFPS VDHFREVLGH YNITDFEKLK PRMIQAVDDM LSHDIPELLK NFRNPYE

Best Arabidopsis Sequence Match ( AT3G20290.1 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.