Factsheet for Os06t0687800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88852	Sorghum	cytosol	91.54	91.54
Zm00001d014526_P002	Maize	cytosol	91.54	91.04
TraesCS7D01G430800.1	Wheat	cytosol	90.81	90.64
TraesCS7B01G340200.2	Wheat	cytosol	90.81	90.64
TraesCS7A01G441500.1	Wheat	cytosol	90.62	90.46
Os02t0158100-01	Rice	cytosol	85.29	85.45
PGSC0003DMT400034517	Potato	cytosol	43.75	82.93
VIT_00s0516g00020.t01	Wine grape	cytosol	82.17	81.27
GSMUA_Achr5P23200_001	Banana	cytosol	80.15	80.59
KRH02006	Soybean	cytosol	78.86	78.72
KRH51151	Soybean	cytosol	78.68	78.53
KRH11510	Soybean	cytosol	77.76	78.48
KRH36524	Soybean	cytosol	77.21	77.92
Os04t0669300-01	Rice	plasma membrane	76.65	76.94
AT4G05520.1	Thale cress	cytosol	76.47	76.19
Solyc11g012020.1.1	Tomato	cytosol	76.47	76.05
CDY16689	Canola	cytosol	75.92	75.64
Bra029477.1-P	Field mustard	cytosol	75.92	75.64
CDX94536	Canola	cytosol	75.37	74.95
HORVU7Hr1G100500.8	Barley	cytosol, plastid	87.13	74.65
GSMUA_Achr5P23220_001	Banana	cytosol	65.62	70.55
KRH45544	Soybean	cytosol	24.08	55.98
Os06t0687900-01	Rice	cytosol	4.04	18.33
Os06t0728600-00	Rice	plasma membrane	17.46	10.63
Os03t0130500-01	Rice	plasma membrane	20.04	10.21

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4341894	EMBL:AK072593
ProteinID:BAD45606.1	ProteinID:BAD46062.1	ProteinID:BAF20324.1	ProteinID:BAS99208.1	ncoils:Coil	InterPro:Dynamin_SF
ProteinID:EAZ38080.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom
InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	EnsemblPlantsGene:Os06g0687800	EnsemblPlants:Os06t0687800-01	InterPro:P-loop_NTPase
PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031	PFscan:PS50222	PFscan:PS51718
PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	UniProt:Q653F5	SMART:SM00027	SMART:SM00054	SUPFAM:SSF47473
SUPFAM:SSF52540	UniParc:UPI000043A346	RefSeq:XP_015644272.1	SEG:seg	:	:

Description

Similar to Pincher (EH-domain containing 4). (Os06t0687800-01)

Coordinates

chr6:+:28688944..28693950

Molecular Weight (calculated)

61079.3 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.385

Length

544 amino acids

Sequence
(BLAST)

001: MEIGQHPASG YSKEHQKTYQ EWFAFADSDG DGRITGPDAI KFFAMSKLPR ADLKQVWAIA DSKRQGYLGF SEFVTAMQLV SLAQAGDEIT QDSLKRDDLG
101: SLNPPTMDGL DALLVKSKHH AKRVDPDIDG FPQAQSPATS QWFSSKSSKK IPLNAVTSVI DGLKKLYIEK LKPLEVTYKF NDFVSPLLTN SDFDAKPMVM
201: LLGQYSTGKT TFIKHLLRTS YPGAHIGPEP TTDRFVVVMS GPDERTIPGN TIAVQADMPF SGLTTFGTAF LSKFECSQMP HPLLEHITFV DTPGVLSGEK
301: QRTQRSYDFT GVTSWFAAKC DLILLLFDPH KLDISDEFKR VIGSLRGHDD KIRVVLNKAD QVDTQQLMRV YGALMWSLGK VLNTPEVARV YIGSFNDKPV
401: NESAVGPIGK ELFEREQDDL LSDLKDIPKK ACDRRINEFV KRARAAKIHA HIIGHLKKEM PAMMGKAKAQ QRLIDNLENE FAKVQREQHL PAGDFPYVEH
501: FRDVLGGYSI DKFEKIKPKM VQAVDDMLGY DIPELLKNFR NPYE

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.