Factsheet for Os04t0669300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11620	Sorghum	cytosol	89.67	89.67
TraesCS2D01G544000.1	Wheat	cytosol	86.9	86.26
TraesCS2B01G572600.1	Wheat	cytosol	86.72	86.08
TraesCS2A01G542800.1	Wheat	cytosol	86.53	85.9
HORVU2Hr1G122390.1	Barley	cytosol	85.79	84.85
GSMUA_Achr4P20130_001	Banana	cytosol	78.23	78.08
PGSC0003DMT400034517	Potato	cytosol	41.33	78.05
Os06t0687800-01	Rice	plasma membrane	76.94	76.65
Os02t0158100-01	Rice	cytosol	74.17	74.03
VIT_00s0516g00020.t01	Wine grape	cytosol	74.72	73.64
KRH51151	Soybean	cytosol	73.06	72.66
KRH02006	Soybean	cytosol	72.88	72.48
KRH36524	Soybean	cytosol	71.96	72.36
Zm00001d001906_P004	Maize	cytosol	84.69	72.17
KRH11510	Soybean	cytosol	71.59	71.99
AT4G05520.1	Thale cress	cytosol	71.96	71.43
CDX94536	Canola	cytosol	71.77	71.12
CDY16689	Canola	cytosol	71.59	71.06
Bra029477.1-P	Field mustard	cytosol	71.59	71.06
Solyc11g012020.1.1	Tomato	cytosol	71.4	70.75
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	75.65	65.5
KRH45544	Soybean	cytosol	22.14	51.28
Os06t0687900-01	Rice	cytosol	3.87	17.5
Os06t0728600-00	Rice	plasma membrane	16.42	9.96
Os03t0130500-01	Rice	plasma membrane	18.63	9.46

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4337342	ProteinID:BAF16116.1
ProteinID:BAS91541.1	ProteinID:CAE02814.2	ncoils:Coil	InterPro:Dynamin_SF	ProteinID:EEE61874.1	InterPro:EF-hand-dom_pair
InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	EnsemblPlantsGene:Os04g0669300	EnsemblPlants:Os04t0669300-01
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF12763	PFAM:PF16880	PFscan:PS50031	PFscan:PS50222
PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF85	UniProt:Q7XR66	SMART:SM00027	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF52540	UniParc:UPI000021C68F	RefSeq:XP_015633605.1	SEG:seg	:

Description

EF hand domain containing protein. (Os04t0669300-01)

Coordinates

chr4:+:34138228..34142138

Molecular Weight (calculated)

61053.2 Da

IEP (calculated)

7.692

GRAVY (calculated)

-0.417

Length

542 amino acids

Sequence
(BLAST)

001: MGSDSPPKKW GLREQREAYL RWFSLADDDG DGRVTGKDAL KFFAMSNLSR PELKQVWAIA DSKRQGYLGF SEFMTAMQLV SLAQAGNEIS QDTLAHADLE
101: TLLPPTMEGL DKKLKNNSMS KSNSDIVVRH PSELPASANW FNSKSGKKIP LRSVTSIIDG LKKSYIEKLR PLEKTYQFDD FVSPLLTSSD FDAKPMVMLL
201: GQYSTGKTTF IKHLLKTNYP GAHIGPEPTT DRFVVITSGP DERCIPGNTI AVQADMPYSG LSSFGTAFLS KFECSQMPHP LLDHITFVDT PGVLSGEKQR
301: TQRSYDFTGV TSWFAAKCDL ILLLFDPHKL DISDEFKRVI GSLKGHDDKI RIVLNKADQV DAQQLMRVYG ALLWSLGKVL NTPEVMRVYI GSFNDKPIRE
401: TVAGPLGKEL FEKEQEDLLS DLNDIPKKAC DRRINEFVKR SRSAKVHAHI ISHLKKEMPA LMGKAKAQQR LLDTLDEQFA KVQKELHLPA GDFPSVDEYR
501: ETLSAYNFDK FERLKPKLVQ GVDDMLAYDI PDLLKSFRNP YE

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.