Factsheet for GSMUA_Achr4P20130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	63.72	80.47
PGSC0003DMT400034517	Potato	cytosol	42.36	80.14
Os04t0669300-01	Rice	plasma membrane	78.08	78.23
VIT_00s0516g00020.t01	Wine grape	cytosol	79.19	78.18
EES11620	Sorghum	cytosol	77.35	77.49
GSMUA_Achr5P23200_001	Banana	cytosol	77.16	77.45
KRH51151	Soybean	cytosol	76.8	76.51
KRH36524	Soybean	cytosol	75.69	76.25
KRH02006	Soybean	cytosol	76.43	76.15
KRH11510	Soybean	cytosol	75.51	76.07
AT4G05520.1	Thale cress	cytosol	76.06	75.64
Bra029477.1-P	Field mustard	cytosol	75.87	75.46
CDY16689	Canola	cytosol	75.87	75.46
GSMUA_Achr3P01050_001	Banana	cytosol, plastid	86.56	75.08
CDX94536	Canola	cytosol	75.51	74.95
TraesCS2A01G542800.1	Wheat	cytosol	75.32	74.91
TraesCS2D01G544000.1	Wheat	cytosol	75.14	74.73
HORVU2Hr1G122390.1	Barley	cytosol	75.14	74.45
TraesCS2B01G572600.1	Wheat	cytosol	74.59	74.18
Solyc11g012020.1.1	Tomato	cytosol	73.85	73.31
GSMUA_Achr5P23220_001	Banana	cytosol	62.43	67.0
Zm00001d001906_P004	Maize	cytosol	73.85	63.05
GSMUA_Achr3P20110_001	Banana	cytosol	16.94	58.6
KRH45544	Soybean	cytosol	23.39	54.27
GSMUA_Achr8P13410_001	Banana	cytosol	3.13	29.82
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	16.57	9.5
GSMUA_Achr4P11750_001	Banana	cytosol	18.6	9.41
GSMUA_Achr8P13420_001	Banana	cytosol	16.39	9.35

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_SF
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	EnsemblPlantsGene:GSMUA_Achr4G20130_001	EnsemblPlants:GSMUA_Achr4P20130_001
EnsemblPlants:GSMUA_Achr4T20130_001	InterPro:G_DYNAMIN_dom	InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	UniProt:M0SQH6
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF13499	PFAM:PF16880	PFscan:PS50031	PFscan:PS50222
PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027	SMART:SM00054	SUPFAM:SSF47473
SUPFAM:SSF52540	UniParc:UPI000294BEA9	:	:	:	:

Description

EH domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20130_001]

Coordinates

chr4:+:20854575..20860652

Molecular Weight (calculated)

61276.9 Da

IEP (calculated)

7.887

GRAVY (calculated)

-0.391

Length

543 amino acids

Sequence
(BLAST)

001: MNLVSSSVAS CPKEKQKIYQ EWFSVADKDG DGRITGNDAL KFFAMSKLSR SELKQVWAIA DSKRQGFLDL QEFINAMQLV ALAQEGHEMT PDLLNHADLE
101: NLKPPVMEGL DIRLAKSKRS EKKSDPCSDV PPQPQSPASA RWFNSKSAKK IPSKSVTSII DGLKKLYIEK LKPLEVTYQF SDFVSPLLTN SDFDAKPMVM
201: LLGQYSTGKT TFIKHLLKSS YPGAHIGPEP TTDRFVVITS GPDERSIPGN TIAVQADMPY NGLTAFGTGF LSKFECSQMP HPLLEHITFV DTPGVLSGEK
301: QRTQRSYDFT GVTSWFAAKC DLVLLLFDPY KLDISDEFKR VIGSLRGHDD KIRVVLNKAD QVDTQQLMRV YGALLWSLGK VLNTPEVMRV YIGSFNDKPI
401: NEAEHAVIGK LFEKEQEDLL SDLNDIPKKA CDRRINEFVK RARAAKVHAC IISHLKKEMP AMMGKAKAQQ KLIDNLEEEF LKVQKEFHLA PGDFPNVDQF
501: REVLGGYNID KFEKMKHKMI QAVDDMLGYD IPELLKRFRN PYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.