Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P13410_001 | Banana | cytosol | 3.54 | 66.67 |
| KRH74100 | Soybean | cytosol | 7.36 | 59.4 |
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 45.85 | 54.07 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 41.85 | 47.16 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 41.29 | 46.78 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 42.96 | 45.83 |
| PGSC0003DMT400025666 | Potato | cytosol | 6.9 | 45.68 |
| KRH14013 | Soybean | endoplasmic reticulum | 43.99 | 45.52 |
| Os06t0728600-00 | Rice | plasma membrane | 37.37 | 44.85 |
| KRH74101 | Soybean | endoplasmic reticulum | 35.51 | 44.41 |
| KRH60909 | Soybean | endoplasmic reticulum | 41.19 | 41.62 |
| Solyc02g082540.2.1 | Tomato | nucleus | 40.17 | 41.44 |
| CDY29508 | Canola | cytosol | 38.3 | 41.39 |
| CDY01356 | Canola | cytosol | 37.74 | 41.33 |
| CDY66337 | Canola | cytosol | 38.12 | 41.31 |
| Bra012247.1-P | Field mustard | cytosol | 38.49 | 41.3 |
| Bra025842.1-P | Field mustard | cytosol | 38.49 | 41.18 |
| CDY31869 | Canola | cytosol | 38.02 | 41.17 |
| AT1G20760.1 | Thale cress | cytosol | 38.86 | 40.92 |
| CDX96625 | Canola | cytosol | 36.91 | 40.41 |
| KRH51589 | Soybean | endoplasmic reticulum | 40.35 | 40.24 |
| CDY38814 | Canola | cytosol | 42.03 | 39.42 |
| CDY08192 | Canola | cytosol | 42.5 | 39.21 |
| CDY04654 | Canola | cytosol | 42.78 | 39.0 |
| CDY33644 | Canola | cytosol | 36.07 | 38.93 |
| CDY00394 | Canola | cytosol | 41.38 | 38.81 |
| CDX96582 | Canola | cytosol | 41.01 | 38.5 |
| Bra016413.1-P | Field mustard | cytosol | 40.73 | 38.33 |
| Zm00001d014862_P002 | Maize | cytosol | 43.24 | 38.32 |
| Bra012288.1-P | Field mustard | cytosol | 40.17 | 38.04 |
| Zm00001d037125_P009 | Maize | cytosol | 42.78 | 38.0 |
| EER89004 | Sorghum | cytosol | 43.24 | 37.85 |
| CDY01320 | Canola | cytosol | 41.29 | 37.51 |
| Solyc04g082560.2.1 | Tomato | cytosol | 41.75 | 36.48 |
| Bra017933.1-P | Field mustard | cytosol | 41.75 | 36.33 |
| AT1G21630.2 | Thale cress | cytosol | 42.22 | 36.33 |
| TraesCS7D01G539600.2 | Wheat | cytosol | 43.71 | 36.3 |
| TraesCS7A01G553100.1 | Wheat | cytosol | 43.62 | 36.17 |
| TraesCS7B01G476800.3 | Wheat | cytosol | 43.62 | 36.03 |
| HORVU7Hr1G121230.4 | Barley | cytosol | 42.31 | 35.03 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 36.25 | 34.27 |
| GSMUA_Achr3P20110_001 | Banana | cytosol | 4.29 | 29.3 |
| Solyc02g082530.1.1 | Tomato | nucleus | 2.14 | 23.71 |
| GSMUA_Achr4P20130_001 | Banana | cytosol | 9.41 | 18.6 |
| GSMUA_Achr5P23200_001 | Banana | cytosol | 9.13 | 18.11 |
| GSMUA_Achr5P23220_001 | Banana | cytosol | 7.83 | 16.6 |
| GSMUA_Achr3P20100_001 | Banana | cytosol, endoplasmic reticulum | 6.43 | 16.05 |
| GSMUA_Achr3P01050_001 | Banana | cytosol, plastid | 9.23 | 15.81 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr4G11750_001 |
| EnsemblPlants:GSMUA_Achr4P11750_001 | EnsemblPlants:GSMUA_Achr4T11750_001 | InterPro:IPR000261 | InterPro:IPR002048 | UniProt:M0SN40 | PFAM:PF12763 |
| PFAM:PF13202 | ScanProsite:PS00018 | PFscan:PS50031 | PFscan:PS50222 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 |
| SMART:SM00027 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0002968DF4 | SEG:seg | : |
Description
EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G11750_001]
Coordinates
chr4:-:8542517..8559819
Molecular Weight (calculated)
118526.0 Da
IEP (calculated)
5.169
GRAVY (calculated)
-0.676
Length
1073 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAARPNQVAD MRVFDAYFMR ADLDRDGRIS GHEAVAFFQG ANLPRQVLAQ VPACIVYESD RSLLLTTAAL PLMTVLRSDE HNVIPDRYFV AMESFSYKRL
0101: SIVAKSIIRV IDHVKWLVGI DICNSFSELL NFNFFLVWMY ADQKRAGFLG REEFYNALRL ITVAQRGIEL TPEIVQAALK SPDAAKIPAP KINAVPDPAS
0201: QMKPTNQNPG FGPNIQNPGF GPTNQNPGFI GQPPHQNTGM NQHAFPTGNN LMRPPQATPV AVRPFHKEVG QVLPGGSSTA SPYPPGSSSS NVSTDWFSGR
0301: NIPSKPGDAI LPSLQSDSRA LVLAGNGFSS DSTFGGDSFS ATQAKQEKNV SSFSSSTTPK SSSIQSQSGM KQSTPAMTGL SGPVGSVGST SSQPQLSWPK
0401: FTQSDIQRYL VIFIKVDNDR DGKITGEEAR NLFLSWRLPR EVLKQVWDLS DQDNDGMLSL REFCIALYLM ERHREKCPLP AVLPESVRSD QTLLLATNQP
0501: LTGYGGPVSQ STPVQGTALS RPAVPAVSVK PQIPKPIPSQ TDDTIQSVKK SKVPVLEKHL VDQLSKDEQS TLHSKFQEAS DADKKVQELE KEILDSKEKT
0601: EFYRSKMQEL VLYKSRCDNR FNEITERASA DKREVESLMK KYEEKYKQAG DVASKLTIEE ATFRDIQEKK LEIYDAILKI EQGGTADGLL QARAAHIQKD
0701: LEELVKVLNE RCKQYGLRSK PTSLIELPFG WQPGIQEGAA DWDEDWDKFE EDGFVAVKEL TIEVEKVVPT EKSKPEEVKK EKLSTEEVSR ASSSNGENKT
0801: EKHSNGENET EKRSSDEDET DKRLNDENKT EKPSTATAPL TENGSTNLDG DDSLAKSPSS PGTSALESPK DIHHVSVRHD GSPHANENSS DHDAAESFIL
0901: EDKHAGEPSW GPTFDRTDDT DSVWSFNPKE SDHQKRRQNF SFGSDDFGLF PPIKTDSPSA ASVGGKEKGP FFDSVPSTPL FNSGFSPRFT EGPDDHSFDS
1001: FSQHDFFGTN DTGAFAQREG LSRFDSFRST TDYGRDHSRG YSSFDGGDLF GSEPFKSSES HSPKKGTTNW DAF
0101: SIVAKSIIRV IDHVKWLVGI DICNSFSELL NFNFFLVWMY ADQKRAGFLG REEFYNALRL ITVAQRGIEL TPEIVQAALK SPDAAKIPAP KINAVPDPAS
0201: QMKPTNQNPG FGPNIQNPGF GPTNQNPGFI GQPPHQNTGM NQHAFPTGNN LMRPPQATPV AVRPFHKEVG QVLPGGSSTA SPYPPGSSSS NVSTDWFSGR
0301: NIPSKPGDAI LPSLQSDSRA LVLAGNGFSS DSTFGGDSFS ATQAKQEKNV SSFSSSTTPK SSSIQSQSGM KQSTPAMTGL SGPVGSVGST SSQPQLSWPK
0401: FTQSDIQRYL VIFIKVDNDR DGKITGEEAR NLFLSWRLPR EVLKQVWDLS DQDNDGMLSL REFCIALYLM ERHREKCPLP AVLPESVRSD QTLLLATNQP
0501: LTGYGGPVSQ STPVQGTALS RPAVPAVSVK PQIPKPIPSQ TDDTIQSVKK SKVPVLEKHL VDQLSKDEQS TLHSKFQEAS DADKKVQELE KEILDSKEKT
0601: EFYRSKMQEL VLYKSRCDNR FNEITERASA DKREVESLMK KYEEKYKQAG DVASKLTIEE ATFRDIQEKK LEIYDAILKI EQGGTADGLL QARAAHIQKD
0701: LEELVKVLNE RCKQYGLRSK PTSLIELPFG WQPGIQEGAA DWDEDWDKFE EDGFVAVKEL TIEVEKVVPT EKSKPEEVKK EKLSTEEVSR ASSSNGENKT
0801: EKHSNGENET EKRSSDEDET DKRLNDENKT EKPSTATAPL TENGSTNLDG DDSLAKSPSS PGTSALESPK DIHHVSVRHD GSPHANENSS DHDAAESFIL
0901: EDKHAGEPSW GPTFDRTDDT DSVWSFNPKE SDHQKRRQNF SFGSDDFGLF PPIKTDSPSA ASVGGKEKGP FFDSVPSTPL FNSGFSPRFT EGPDDHSFDS
1001: FSQHDFFGTN DTGAFAQREG LSRFDSFRST TDYGRDHSRG YSSFDGGDLF GSEPFKSSES HSPKKGTTNW DAF
0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK SGNVGSKLTI EEATFRDIQE KKMELYQAIV
0701: KFEEGKLDDS IVKERTEHIQ SGLEELIKNL NERCKQYGVR GKPTSLVELP FGWQPGIQEG AADWDEDWDK LEDEGFTFVK ELTLDIQNVI APPKEKSSAW
0801: RKEVDVSSKE GEDVSFSDAD SKTGKKQSSG EEDSEQSEGK TSDVDARDKN GSLDDSKVRK GIEADSSPRT KDTRSENGHD DGESTASAGK TVNYDSHDET
0901: DSVSSVNPDN GKDKDHGKYD SGFGFGFGFD DFSIKPIKTG STISNDFLPP KLSIFADSVP SPPANASDVS PTKPSLFADS VPSTPATNNA SYPGQKSFFD
1001: DSVPSTPAYP GNLFAEKKSY FDDSVPSTPA YSTSDFGGKP FASETPRSDN LFPGRSPFMF DSVPSTPAAH DDFSNNSFSR FDSFNSNNND AFSLSRTDSM
1101: RSTSEPDPFA SRFDSFNYQR YDSFNAQSYD SSSNNNASET PKASLTRFDS IGSTRDSDYS HGFGFDDHDP FGSTGPFKTT TTTAETPRSS DNWNAF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.