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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66337 Canola cytosol 86.46 88.99
CDY31869 Canola cytosol 86.36 88.8
Bra025842.1-P Field mustard cytosol 86.85 88.24
CDY29508 Canola cytosol 85.97 88.22
CDY01356 Canola cytosol 84.79 88.16
Bra012247.1-P Field mustard cytosol 86.36 88.0
CDX96625 Canola cytosol 83.61 86.94
CDY33644 Canola cytosol 83.32 85.41
Bra016455.1-P Field mustard nucleus, plastid 82.34 73.92
KRH60909 Soybean endoplasmic reticulum 55.54 53.3
KRH51589 Soybean endoplasmic reticulum 54.96 52.04
PGSC0003DMT400025666 Potato cytosol 8.15 51.23
VIT_18s0122g01080.t01 Wine grape cytosol 50.54 51.19
Solyc02g082530.1.1 Tomato nucleus 4.51 47.42
GSMUA_Achr5P19150_001 Banana endoplasmic reticulum 39.74 42.77
GSMUA_Achr8P13420_001 Banana cytosol 39.74 42.54
EER92924 Sorghum cytosol 42.49 41.44
Os03t0130500-01 Rice plasma membrane 43.38 41.39
TraesCS4D01G321600.1 Wheat cytosol 42.39 39.67
TraesCS5A01G497000.1 Wheat cytosol 42.2 39.67
TraesCS4B01G324500.1 Wheat cytosol 41.9 39.65
GSMUA_Achr4P11750_001 Banana cytosol 40.92 38.86
HORVU4Hr1G082280.2 Barley cytosol 42.59 38.37
Solyc04g082560.2.1 Tomato cytosol 45.83 38.03
Zm00001d048338_P035 Maize cytosol 38.08 35.76
AT1G21630.2 Thale cress cytosol 43.57 35.61
Os06t0728600-00 Rice plasma membrane 30.81 35.12
Zm00001d027503_P036 Maize cytosol 35.82 34.4
Zm00001d037125_P009 Maize cytosol 38.96 32.86
Zm00001d014862_P002 Maize cytosol 38.86 32.7
EER89004 Sorghum cytosol 39.16 32.54
TraesCS7D01G539600.2 Wheat cytosol 38.47 30.34
TraesCS7B01G476800.3 Wheat cytosol 38.67 30.33
TraesCS7A01G553100.1 Wheat cytosol 38.47 30.29
HORVU7Hr1G121230.4 Barley cytosol 37.19 29.24
AT3G20290.1 Thale cress cytosol 10.3 19.27
AT4G05520.1 Thale cress cytosol 9.62 17.95
Protein Annotations
Gene3D:1.10.238.10MapMan:22.1.4.7EntrezGene:838666ProteinID:AAF80620.1ProteinID:AEE30019.1EMBL:AK226951
ArrayExpress:AT1G20760EnsemblPlantsGene:AT1G20760RefSeq:AT1G20760TAIR:AT1G20760RefSeq:AT1G20760-TAIR-GEnsemblPlants:AT1G20760.1
TAIR:AT1G20760.1Unigene:At.27660ncoils:CoilInterPro:EF-hand-dom_pairInterPro:EF_hand_domInterPro:EH_dom
GO:GO:0003674GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0016020InterPro:IPR000261InterPro:IPR002048RefSeq:NP_173499.1PFAM:PF12763
PFAM:PF13202PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50031
PFscan:PS50222PANTHER:PTHR11216PANTHER:PTHR11216:SF116UniProt:Q9LM78SMART:SM00027SMART:SM00054
SUPFAM:SSF47473UniParc:UPI00000A6211SEG:seg:::
Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
Coordinates
chr1:+:7209298..7214993
Molecular Weight (calculated)
109824.0 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.740
Length
1019 amino acids
Sequence
(BLAST)
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.