Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G321600.1 | Wheat | cytosol | 98.7 | 97.61 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 96.94 | 96.31 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 94.15 | 89.66 |
| Os03t0130500-01 | Rice | plasma membrane | 79.11 | 79.78 |
| EER92924 | Sorghum | cytosol | 77.34 | 79.71 |
| Zm00001d027503_P036 | Maize | cytosol | 67.13 | 68.14 |
| Zm00001d048338_P035 | Maize | cytosol | 68.43 | 67.93 |
| KRH74100 | Soybean | cytosol | 6.78 | 54.89 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 41.6 | 47.31 |
| VIT_03s0038g03870.t01 | Wine grape | cytosol | 39.46 | 46.7 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 40.76 | 46.11 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 42.53 | 45.53 |
| KRH60909 | Soybean | endoplasmic reticulum | 42.9 | 43.5 |
| CDY31869 | Canola | cytosol | 39.18 | 42.58 |
| Bra025842.1-P | Field mustard | cytosol | 39.55 | 42.47 |
| KRH51589 | Soybean | endoplasmic reticulum | 42.43 | 42.47 |
| CDX96625 | Canola | cytosol | 38.63 | 42.45 |
| Bra012247.1-P | Field mustard | cytosol | 39.37 | 42.4 |
| CDY01356 | Canola | cytosol | 38.53 | 42.35 |
| CDY29508 | Canola | cytosol | 38.81 | 42.09 |
| CDY66337 | Canola | cytosol | 38.63 | 42.02 |
| CDY33644 | Canola | cytosol | 38.72 | 41.95 |
| AT1G20760.1 | Thale cress | cytosol | 39.65 | 41.9 |
| KRH14013 | Soybean | endoplasmic reticulum | 39.18 | 40.69 |
| KRH74101 | Soybean | endoplasmic reticulum | 30.83 | 38.69 |
| PGSC0003DMT400025666 | Potato | cytosol | 5.66 | 37.65 |
| Bra016455.1-P | Field mustard | nucleus, plastid | 38.25 | 36.3 |
| Solyc02g082540.2.1 | Tomato | nucleus | 34.54 | 35.77 |
| Solyc04g082560.2.1 | Tomato | cytosol | 39.55 | 34.69 |
| CDY00394 | Canola | cytosol | 36.49 | 34.35 |
| Bra012288.1-P | Field mustard | cytosol | 35.84 | 34.07 |
| CDY08192 | Canola | cytosol | 36.77 | 34.05 |
| CDY38814 | Canola | cytosol | 35.84 | 33.74 |
| CDY04654 | Canola | cytosol | 36.68 | 33.56 |
| CDY01320 | Canola | cytosol | 36.49 | 33.28 |
| CDX96582 | Canola | cytosol | 35.1 | 33.07 |
| Bra016413.1-P | Field mustard | cytosol | 35.0 | 33.07 |
| AT1G21630.2 | Thale cress | cytosol | 37.51 | 32.4 |
| TraesCS7B01G476800.3 | Wheat | cytosol | 38.16 | 31.64 |
| Bra017933.1-P | Field mustard | cytosol | 35.75 | 31.22 |
| Solyc02g082530.1.1 | Tomato | nucleus | 2.23 | 24.74 |
| TraesCS7B01G340200.2 | Wheat | cytosol | 10.59 | 20.92 |
| TraesCS6B01G159700.1 | Wheat | cytosol | 10.4 | 20.48 |
| TraesCS2B01G572600.1 | Wheat | cytosol | 9.38 | 18.5 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| InterPro:EH_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | InterPro:IPR000261 |
| InterPro:IPR002048 | PFAM:PF12763 | PFAM:PF13202 | ScanProsite:PS00018 | PFscan:PS50031 | PFscan:PS50222 |
| PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SMART:SM00054 | SUPFAM:SSF47473 | EnsemblPlantsGene:TraesCS4B01G324500 |
| EnsemblPlants:TraesCS4B01G324500.1 | TIGR:cd00052 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:-:615556773..615563195
Molecular Weight (calculated)
113852.0 Da
IEP (calculated)
5.726
GRAVY (calculated)
-0.615
Length
1077 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGMEAFEAY FRRADLNQDG RISGQEAVAF FQGASLPQQV LAQVWMHADQ SKTGFLGRPE FFNALRLVTV AQSGRQLTPD IVQSALYGPA AARIPPPKIA
0101: GGPAPPQAAA GAPRPQGNAA APAPAPGQAG AAQMNPAAAA PRPQGSGMMP TSAAAPRPQG SGMMPTSAAA PRPQGSGMMP TSTQFAGAPQ ASAGAVPRPQ
0201: GVNSMMPAAS QGGAMPPNQF TAPRGIQSQS PNMGYAQQLL GSSTGFMRPP PQVGAPATSL QATGMNQSPL GGGSMGGSVG WQGGNVGSFG GISQPSPGAA
0301: VPSQTTSGMS SSMSMVPGQQ THAMSSSSLP PQSNSAVLPS DSRALVLSGN GPASGSGAST DIFSALTQPK PSTSTPALPT SKMPNSSSFM SKPTGSQNLA
0401: NLTQPGSLQG TPTVSYGTSQ PQQTQPITKP SVPSPGVSAG VSNSTSQWPK VTQSDIQKYT KVFGDVDRDR DGKITGAEAR TLFLSWRLPR DVLKQVWDLS
0501: DNDGMLSLRE FCIALYLMER NRAGTPLPPS LPDSLKFDET LLRATGLPST AYNAPSWQPN QGLLHRGPGA PGLPTGGVRP PLPQMHSQTD GATRPGQPRP
0601: HMPGMDNHAA AQGIKDDRSG VNSAAQEAPK KVEVEKQVLD SREKLEYYRS KMQDLVLYKS RCDNRLNEIT ERASSDKREV ELLSKKYEEK YKQVAELASK
0701: LAVEEAAFRD VQERKVELND ALIKMVQGGS VDGLLQVRAD RIQHQLEEME KAFNERCKHF GLQFKPSATV ELPFGWEPGQ QEGAVEWDED WDKFEDEGFG
0801: LVKDNGTIVE NPASADIANA SSLWDDGVST DASSNGHIKD VRHYRAGDQA PESELAYDFG DEPVRSPGSA GRSASGSPFK SSRFGVHDSS PTKKGTYSDH
0901: GGSESVFGDN YGDETTWNFD DQDTESVWGS NAMNEPGHHG SNSFFGSDDF NVDPVRVGSP TGASAYGKKS TFFDDSVPSS PAYTSGFSPK FGESRDDSSS
1001: YNFGRFDSFR SQDSAVPQES RFSRFDSVTS SKGESAAGFD SSNSSRNFGR FDSFDEADPF GSTGPFKASG ARSPPKF
0101: GGPAPPQAAA GAPRPQGNAA APAPAPGQAG AAQMNPAAAA PRPQGSGMMP TSAAAPRPQG SGMMPTSAAA PRPQGSGMMP TSTQFAGAPQ ASAGAVPRPQ
0201: GVNSMMPAAS QGGAMPPNQF TAPRGIQSQS PNMGYAQQLL GSSTGFMRPP PQVGAPATSL QATGMNQSPL GGGSMGGSVG WQGGNVGSFG GISQPSPGAA
0301: VPSQTTSGMS SSMSMVPGQQ THAMSSSSLP PQSNSAVLPS DSRALVLSGN GPASGSGAST DIFSALTQPK PSTSTPALPT SKMPNSSSFM SKPTGSQNLA
0401: NLTQPGSLQG TPTVSYGTSQ PQQTQPITKP SVPSPGVSAG VSNSTSQWPK VTQSDIQKYT KVFGDVDRDR DGKITGAEAR TLFLSWRLPR DVLKQVWDLS
0501: DNDGMLSLRE FCIALYLMER NRAGTPLPPS LPDSLKFDET LLRATGLPST AYNAPSWQPN QGLLHRGPGA PGLPTGGVRP PLPQMHSQTD GATRPGQPRP
0601: HMPGMDNHAA AQGIKDDRSG VNSAAQEAPK KVEVEKQVLD SREKLEYYRS KMQDLVLYKS RCDNRLNEIT ERASSDKREV ELLSKKYEEK YKQVAELASK
0701: LAVEEAAFRD VQERKVELND ALIKMVQGGS VDGLLQVRAD RIQHQLEEME KAFNERCKHF GLQFKPSATV ELPFGWEPGQ QEGAVEWDED WDKFEDEGFG
0801: LVKDNGTIVE NPASADIANA SSLWDDGVST DASSNGHIKD VRHYRAGDQA PESELAYDFG DEPVRSPGSA GRSASGSPFK SSRFGVHDSS PTKKGTYSDH
0901: GGSESVFGDN YGDETTWNFD DQDTESVWGS NAMNEPGHHG SNSFFGSDDF NVDPVRVGSP TGASAYGKKS TFFDDSVPSS PAYTSGFSPK FGESRDDSSS
1001: YNFGRFDSFR SQDSAVPQES RFSRFDSVTS SKGESAAGFD SSNSSRNFGR FDSFDEADPF GSTGPFKASG ARSPPKF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.